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mac
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reset
3
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4
replies
2.8k
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R Error: package ‘GenomeInfoDb’ could not be loaded on MacBook
error
mac
DESeq2
GenomeInfoDb
R
3.3 years ago • updated 3.2 years ago
Dan
▴ 20
0
votes
1
reply
1.2k
views
problem loading gwascat and ggbio
gwascat
ggbio
Mac
7.8 years ago
jameshunterbr
• 0
0
votes
1
reply
1.3k
views
MSGFplus: fail to load on Mac OSX 10.13.6 due to javaVersion error
msgfplus
mac
java
updated 5.8 years ago by
Mike Smith
★ 6.5k • written 5.8 years ago by
dgemoets
• 0
0
votes
3
replies
984
views
Problem installing biomaRt on mac
biomaRt
mac
updated 8 months ago by
15753563659
▴ 50 • written 17 months ago by
alfonsosaera
• 0
0
votes
13
replies
2.6k
views
error message with BiocManager::install on Mac console that's not on mac command line
BiocManager
Mac
updated 4.8 years ago by
Martin Morgan
25k • written 4.8 years ago by
raf4
▴ 20
4
votes
2
replies
1.8k
views
The Mac version of R always reports an error when installing WGCNA
software error
WGCNA
mac
updated 4.0 years ago by
James W. MacDonald
65k • written 4.0 years ago by
562125035
• 0
2
votes
3
replies
1.4k
views
bplapply - only SerialParam or single worker Multicore working on R/macos 10.14
BiocParallel
mac
R
updated 5.1 years ago by
Martin Morgan
25k • written 5.1 years ago by
geo.vogler
▴ 10
0
votes
2
replies
1.1k
views
Usinig BiocParallel package in R with M1 MAC
RStudio
R
M1
BiocParallel
Mac
updated 15 months ago by
Christian Mertes
• 0 • written 17 months ago by
me.achleitner
• 0
0
votes
1
reply
1.6k
views
Problem with installation of rhdf5 on R 3.2.0 Mac Yosemite 10.10.4
rhdf5
r
mac
8.7 years ago
ambageo
• 0
9 results • Page
1 of 1
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Answer: DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR)
by
Michael Love
41k
> I got many p values that had "1.000000e+00" and padj "1" and stat of "0" when I added the Log threshold of LFC >1 and LFC < -1...is this …
Comment: Trying to use enrichGO
by
fernanda.backsouza
▴ 10
With all my love, thank you Guido, GOxploreR beeing a big ally for me. I don't know how to be grateful right now.
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.
Answer: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
swbarnes2
★ 1.3k
Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…
Comment: get BM error
by
James W. MacDonald
65k
I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…
Votes
C: when to apply quantile normalization with voom in limma/voom framework with RNA-
A: How to know if I should use voomWithQualityWeights() or not?
A: Weird results (ribosomal proteins / Y-linked genes) in limma/voom
Answer: Log-cpm values from limma
Answer: Log-cpm values from limma
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