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Possible methodologies of machine learning in R that can assimilate continuous variables along gene expression data for microarray classification
classification machinelearning microarray multivariate caret
updated 8.5 years ago by ★ 13k • written 8.5 years ago by ▴ 830
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Cannot specify probability function for extraTrees model in caret package
caret extraTrees machinelearning
8.9 years ago liuy12 • 0
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Job: Bioinformatics Laboratory Head in AI or machine learning (WEHI, Australia)
bioconductor artificialintelligence JobPosting machinelearning
written 8 months ago by 50k
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Machine learning methods for feature selection and possible correlation with clinical data
machinelearning clinicaldata biomarkers data integration bioconductor
9.0 years ago svlachavas ▴ 830
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Job: Group Leader (Machine Learning/AI), Centre for Molecular Medicine, University of Oslo
Biology AI Machinelearning Precisionmedicine Norway
2.1 years ago delete • 0
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Job: Job as a bioinformatician in Hamburg, Germany
DimensionReduction SingleCellData multiomics MachineLearning
16 months ago Diego's • 0
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Job: PhD position in Bioinformatics in Jena
Statistics ComputationalBiology Aging MachineLearning
15 months ago alena.vanboemmel • 0
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Hierarchical Random Forest classifier
rnaseq machinelearning random forest mlseq
8.2 years ago anthony.hawkins ▴ 10
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Error in R package "cancerclass" with function nvalidate
cancerclass bioconductor machinelearning classification
9.0 years ago svlachavas ▴ 830
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Job: Graduate Student in Cancer Genomics / Machine Learning Brigham Young University
machinelearning cancer Job
8.4 years ago Stephen Piccolo ▴ 590
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Answer: Reproducibility issue with scran together with lapply and BiocParallel by Aaron Lun ★ 28k
IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…
Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k
This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…
Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0
I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…
Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge by shuwangxinze1996 • 0
Hello, I used 48 cpus and 320G of memory to run this program. My bam files size are 7-9G, wonder how much CPU and memory is enough? Thank …
Comment: DESeq2 output used for PCA plot on R studio by Kevin Blighe ★ 3.9k
This comment helps.
Votes
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
Answer: How to retrieve gene ontology GO class from gene list?
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