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macs2
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ChIP-Seq Analysis: Comparing Unannotated Peaks with DESeq2
DESeq2
MACS2
16 months ago
vanbelj
▴ 20
0
votes
1
reply
1.8k
views
DiffBind Normalisation between Narrow/Broad Peaks from different peak callers
ChIPSeq
SICER2
DiffBind
MACS2
offtopic
updated 2.8 years ago by
James W. MacDonald
65k • written 2.8 years ago by
Yuan Tian
▴ 270
0
votes
2
replies
1.3k
views
DiffBind consensus peak set
DiffBind
MACS2
updated 3.6 years ago by
Rory Stark
★ 5.1k • written 3.6 years ago by
ep15587
• 0
0
votes
2
replies
1.5k
views
DiffBind peaks input file format
DiffBind
macs2
updated 5.0 years ago by
Rory Stark
★ 5.1k • written 5.2 years ago by
Anna
• 0
0
votes
2
replies
909
views
Binding matrix creation DiffBind after MACS2 peak call
diffbind
macs2
updated 6.0 years ago by
Rory Stark
★ 5.1k • written 6.0 years ago by
Lauma R
▴ 10
1
vote
1
reply
2.2k
views
Importing Chip-Seq Peak MACS2 output (.xls) files into DBA object with Diffbind?
diffbind
macs2
chip-seq
6.3 years ago
chunhong.liu07
▴ 10
2
votes
3
replies
9.1k
views
DiffBind for ATAC-seq
atac-seq
diffbind
macs2
macs
peak finding
updated 7.0 years ago by
BioinfGuru
▴ 20 • written 7.6 years ago by
igor
▴ 40
2
votes
4
replies
4.8k
views
diffbind and macs2 output
diffbind
macs2
updated 8.3 years ago by
Gord Brown
▴ 650 • written 8.3 years ago by
tony
▴ 10
8 results • Page
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Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
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Michael Love
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May be documented by the software you are using? https://github.com/lpantano/DEGreport
Answer: Doing comparison of RNA-seq data using Deseq2
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Michael Love
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Take a look at our workflow, this starts from a beginner's level. You could export from Excel using CSV or TSV, then read into R. htt…
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This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
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mercedeh.movassagh
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Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
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transcript name mapping between human and mouse
transcript name mapping between human and mouse
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Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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