Bioconductor Made4

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made4 plotarrays correspondence analysis ellipse

updated 8.5 years ago by Aedin Culhane ▴ 510 • written 8.8 years ago by maartenvandijk • 0

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Cancer made4 Cancer made4

12.0 years ago Aedin Culhane ▴ 510

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made4 made4

updated 12.0 years ago by Aedin Culhane ▴ 510 • written 12.0 years ago by Valerie Obenchain ★ 6.8k

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made4 made4

12.0 years ago Barbara Bo-Ju Shih ▴ 40

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Cancer graph made4 Cancer graph made4

13.5 years ago Aedin Culhane ▴ 510

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made4 made4

updated 13.9 years ago by Steve Shen ▴ 330 • written 13.9 years ago by Rohit Farmer ▴ 170

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made4 made4

14.2 years ago xiangxue Guo ▴ 70

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made4 made4

14.2 years ago xiangxue Guo ▴ 70

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Cancer made4 ASSIGN Cancer made4 ASSIGN

14.3 years ago Steve Lianoglou ★ 13k

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Network Clustering Cancer Yeast made4 Network Clustering Cancer Yeast made4

16.5 years ago Aedin Culhane ▴ 510

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made4 made4

16.9 years ago Aedin Culhane ▴ 510

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affy made4 affy made4

updated 17.4 years ago by Martin Morgan 25k • written 17.4 years ago by Jenny Drnevich ★ 2.2k

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Classification affy made4 Classification affy made4

updated 17.4 years ago by Aedin Culhane ▴ 510 • written 17.4 years ago by Heike Pospisil ▴ 310

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made4 made4

updated 17.6 years ago by Seth Falcon ★ 7.4k • written 17.6 years ago by Weiwei Shi ★ 1.2k

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Clustering Cancer CGH GLAD made4 Clustering Cancer CGH GLAD made4

17.7 years ago Aedin Culhane ▴ 510

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Clustering Cancer CGH made4 Clustering Cancer CGH made4

17.8 years ago Richard Birnie ▴ 10

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Survival hu6800 cdf probe Biobase genefilter reposTools affy affydata limma gcrma made4

updated 18.0 years ago by Ken Simpson ▴ 70 • written 18.0 years ago by Jenny Drnevich ★ 2.2k

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Biobase affy marray convert made4 Biobase affy marray convert made4

updated 18.4 years ago by Aedin Culhane ▴ 510 • written 18.4 years ago by Jenny Drnevich ★ 2.2k

18 results • Page 1 of 1

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Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Chris • 0

Thanks Robert!

Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Robert Castelo ★ 3.2k

Hi, your `c2` object storing all the gene sets is probably a `list` object, where element names are the names of the pathways given by MSig…

Comment: Differential peaks that were not identified in diffbind were identified in diseq by lonn • 0

I tried the default normalization and got similar results as above. Perhaps I need to try identifying the difference peak without using dif…

Answer: Cannabis and KEGGgraph by deeenes ▴ 30

Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…

Answer: RNAseq:Technical replicates from different batches by Gordon Smyth 50k

I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…

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Comment: The difference when using Limma compare between 3 conditions vs 2 conditions

Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)

A: Docker container with bioconductor and devtools

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

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Scholar to Robert Castelo ★ 3.2k

Popular Question to James W. MacDonald 65k