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Comment: error in ChAMP loading file
by
dr3wgrants
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0
Confirm that the IDAT files are in the correct directory and follow the required naming convention. Make sure the IDAT files are compatible…
Answer: error in ChAMP loading file
by
dr3wgrants
•
0
If you're encountering issues loading files with ChAMP while playing [Lomi lomi massage][1], specifically with the pd file (samplesheet), t…
Answer: Can DESeq2 handle huge variations in sequencing depth among samples?
by
Michael Love
40k
In the 2014 paper we note there is an issue if depth is confounded across condition.
One solution to this design issue is that you coul…
Answer: multiple filters in biomaRt
by
RuBBiT0
▴
10
First, yes, one gene could be related to several GO ID, and the result is based on the annotation package you use.
Second, could you pro…
Comment: Diffbind "No genome detected"
by
kyliecode
•
0
Hi Dr. Stark,
Thanks very much for your reply! The bam files were output from nf-core/chipseq pipeline and for some reason, they do not ha…
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