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maftools
•
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0
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246
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conversion a VCF file into a MAF file
VCFArray
maftools
3 months ago
Bogdan
▴ 670
1
vote
1
reply
889
views
FilterMaf by ranges
maftools
updated 13 months ago by
Nogayhan
• 0 • written 23 months ago by
Jeni
▴ 10
0
votes
0
replies
1.1k
views
How to generate a waterfall plot of mutations and CNAs that don't overlap
GenVisR
maftools
18 months ago
e
• 0
0
votes
0
replies
987
views
function GDCquery_Maf error
rstudio
maftools
20 months ago
misslubblys
• 0
0
votes
0
replies
359
views
Altered Sample in mafSummary
mafSummary
maftools
2.5 years ago
ymoonleong
• 0
0
votes
0
replies
505
views
Oncoplot user error or bug?
maftools
updated 3.5 years ago by
Kevin Blighe
3.9k • written 3.5 years ago by
oddmund.nordgard
• 0
0
votes
1
reply
928
views
Oncoplot with own MutSig file
maftools
mutsig
4.8 years ago
rina
▴ 30
1
vote
2
replies
2.6k
views
maftools: Error in validateMaf(maf = maf, isTCGA = isTCGA, rdup = removeDuplicatedVariants, : missing required fields from MAF: Chromosome
software error
maftools
tcgabiolinks
updated 6.1 years ago by
Tiago C. Silva
▴ 270 • written 6.2 years ago by
Ramiro Magno
▴ 100
0
votes
1
reply
1.7k
views
How to plot Oncoplot with out sorting
maftools
updated 6.2 years ago by
anand_mt
▴ 90 • written 6.2 years ago by
seeker
• 0
2
votes
3
replies
1.9k
views
about MAFTOOLS and ComplexHeatmap
complexheatmap
maftools
updated 6.3 years ago by
anand_mt
▴ 90 • written 6.3 years ago by
Bogdan
▴ 670
0
votes
1
reply
1.3k
views
Maftools required fields do not match with vignette
maftools
updated 6.4 years ago by
anand_mt
▴ 90 • written 6.4 years ago by
Silvia
• 0
2
votes
2
replies
1.2k
views
about reshaping a data frame
maftools
complexheatmap
updated 6.4 years ago by
Haiying.Kong
▴ 110 • written 6.4 years ago by
Bogdan
▴ 670
0
votes
1
reply
1.3k
views
how to create cnTable in maftools ?
maftools
updated 6.7 years ago by
anand_mt
▴ 90 • written 6.7 years ago by
seeker
• 0
0
votes
1
reply
1.4k
views
about maftools and gene names
maftools
updated 6.8 years ago by
anand_mt
▴ 90 • written 6.8 years ago by
Bogdan
▴ 670
4
votes
6
replies
2.5k
views
about MAFTOOLS and MAF files
maftools
genevisr
6.8 years ago
Bogdan
▴ 670
2
votes
2
replies
1.8k
views
BioC and genevisR and maftools
genevisr
maftools
bioconductor
biocinstaller
6.9 years ago
Bogdan
▴ 670
0
votes
0
replies
1.0k
views
Errors in maftoos::readGistic
maftools
Gistic
7.1 years ago
hustlxc
• 0
17 results • Page
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Answer: RNASeq time course analysis, missing time points for control
by
Gordon Smyth
48k
You could fit a spline trend with design matrix `treatment+spline`. Then it won't matter than the control and treatment times don't match u…
Comment: DESeq2 - groups with biological replicates from the same patient
by
Oscar
• 0
Thanks James for your helpful response. This particular experimental set up is very common in iPSC studies, where multiple differentiations…
Comment: DESeq2 test for synergistic vs additive effects
by
Jay
• 0
Why is TrtAB - TrtA - TrtB + Control "not really a thing"? i came to this forum answer when attempting to use EdgeR to answer a similar que…
Comment: NCBI protein conversion to CDNA and NCBI gene (in R)
by
Gordon Smyth
48k
Continuation of https://support.bioconductor.org/p/9155428/
Comment: Why is DMRcate not available for Bioconductor version 3.18?
by
Tim Peters
▴ 150
Thanks Daniel, Gordon and Lori for flagging this. DSS is only needed for the vignette so I'll remove that section, plus the dependency, som…
Votes
Answer: Confused about the CPM and TMM normalization in edgeR
Answer: Differential gene expression analysis
Comment: Why is DMRcate not available for Bioconductor version 3.18?
Comment: Why is DMRcate not available for Bioconductor version 3.18?
Comment: Why is DMRcate not available for Bioconductor version 3.18?
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