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maftools
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reset
4
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6
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2.7k
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about MAFTOOLS and MAF files
maftools
genevisr
7.2 years ago
Bogdan
▴ 670
2
votes
2
replies
1.9k
views
BioC and genevisR and maftools
genevisr
maftools
bioconductor
biocinstaller
7.3 years ago
Bogdan
▴ 670
2
votes
3
replies
2.1k
views
about MAFTOOLS and ComplexHeatmap
complexheatmap
maftools
updated 6.7 years ago by
anand_mt
▴ 90 • written 6.7 years ago by
Bogdan
▴ 670
2
votes
2
replies
1.3k
views
about reshaping a data frame
maftools
complexheatmap
updated 6.8 years ago by
Haiying.Kong
▴ 110 • written 6.8 years ago by
Bogdan
▴ 670
1
vote
3
replies
3.0k
views
maftools: Error in validateMaf(maf = maf, isTCGA = isTCGA, rdup = removeDuplicatedVariants, : missing required fields from MAF: Chromosome
software error
maftools
tcgabiolinks
updated 4 weeks ago by
snijesh
▴ 20 • written 6.5 years ago by
Ramiro Magno
▴ 100
1
vote
1
reply
1.1k
views
FilterMaf by ranges
maftools
updated 18 months ago by
Nogayhan
• 0 • written 2.3 years ago by
Jeni
▴ 10
0
votes
0
replies
653
views
Oncoplot user error or bug?
maftools
updated 3.9 years ago by
Kevin Blighe
★ 3.9k • written 3.9 years ago by
oddmund.nordgard
• 0
0
votes
0
replies
1.5k
views
How to generate a waterfall plot of mutations and CNAs that don't overlap
GenVisR
maftools
22 months ago
e
• 0
0
votes
0
replies
419
views
Altered Sample in mafSummary
mafSummary
maftools
2.9 years ago
ymoonleong
• 0
0
votes
0
replies
1.1k
views
function GDCquery_Maf error
rstudio
maftools
2.0 years ago
misslubblys
• 0
0
votes
0
replies
1.1k
views
Errors in maftoos::readGistic
maftools
Gistic
7.5 years ago
hustlxc
• 0
0
votes
0
replies
542
views
conversion a VCF file into a MAF file
VCFArray
maftools
8 months ago
Bogdan
▴ 670
0
votes
1
reply
1.5k
views
about maftools and gene names
maftools
updated 7.2 years ago by
anand_mt
▴ 90 • written 7.2 years ago by
Bogdan
▴ 670
0
votes
1
reply
1.4k
views
how to create cnTable in maftools ?
maftools
updated 7.0 years ago by
anand_mt
▴ 90 • written 7.1 years ago by
seeker
• 0
0
votes
1
reply
1.5k
views
Maftools required fields do not match with vignette
maftools
updated 6.7 years ago by
anand_mt
▴ 90 • written 6.8 years ago by
Silvia
• 0
0
votes
1
reply
2.0k
views
How to plot Oncoplot with out sorting
maftools
updated 6.6 years ago by
anand_mt
▴ 90 • written 6.6 years ago by
seeker
• 0
0
votes
1
reply
1.1k
views
Oncoplot with own MutSig file
maftools
mutsig
5.1 years ago
rina
▴ 30
17 results • Page
1 of 1
Recent ...
Replies
Comment: How to tell and visualize up/down regulation of pathways from clusterprofiler gs
by
sredemption
• 0
Try library(enrichplot) dotplot(gsea_FS, showCategory=10, split=".sign") + facet_grid(.~.sign)
Comment: FGSEA pre-ranked input in increasing order or decreasing
by
sropri
• 0
Thank you for your reply and I know there is another post similar to this you had mentioned this. How are the genes that I mentioned in the…
Answer: FGSEA pre-ranked input in increasing order or decreasing
by
alserg
▴ 240
The genes are automatically ordered within `fgsea`, there is no need to sort them manually.
Comment: Differential peaks that were not identified in diffbind were identified in diseq
by
ATpoint
★ 4.0k
Make an MAplot. There is almost certainly an issue with normalization here given the very biased distribution of logFCs as in this Volcano.
Comment: significant difference of p-values with dream() after updating VariancePartition
by
gabriel.hoffman
▴ 100
See variancePartition updates for [v1.33.11](https://diseaseneurogenomics.github.io/variancePartition/news/index.html#variancepartition-133…
Votes
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Comment: Error in champ.load(): The following specified files do not exist
Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos
Using GRanges and IRanges to simply get all chromosome data
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W. Evan Johnson
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Alejandro Reyes
★ 1.9k
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shepherl
3.8k
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