Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
makeContrasts
•
reset
3
votes
4
replies
2.1k
views
How to make design matrices or compare contrast in limma
designmatrices
differentialexpression
makeContrasts
limma
model.matrix
3.9 years ago
mohammedtoufiq91
▴ 10
1
vote
5
replies
1.9k
views
makeContrasts question
makeContrasts
edgeR
updated 4.6 years ago by
Steve Lianoglou
★ 13k • written 4.6 years ago by
Lina
▴ 10
1
vote
2
replies
1.4k
views
How to construct matrix and fit linear model for this microarray?
microarray
dge
matrix
makecontrasts
limma
updated 5.6 years ago by
Gordon Smyth
53k • written 5.6 years ago by
June.
▴ 10
2
votes
2
replies
2.9k
views
makeContrasts for comparing multiple levels of a factor variable to the reference level
diffrential expression
limma
makeContrasts
updated 7.7 years ago by
Gordon Smyth
53k • written 7.7 years ago by
S.Bamopoulos
▴ 10
0
votes
2
replies
1.5k
views
Circumventing statistical non-significance on a triple interaction using edgeR
rnaseq
edgeR
makecontrasts
interactions
updated 7.7 years ago by
Aaron Lun
★ 29k • written 7.7 years ago by
David R
▴ 90
9
votes
3
replies
6.6k
views
[limma] Define contrasts for model with covariates
limma
model.matrix
makecontrasts
updated 7.7 years ago by
Gordon Smyth
53k • written 7.7 years ago by
enricoferrero
▴ 680
0
votes
1
reply
1.0k
views
DESeq2 : how to make model contrast with multifactors : cond1(env1 versus env2) versus cond2(env1 versus env2) ?
deseq2
makecontrasts
updated 8.3 years ago by
Michael Love
43k • written 8.3 years ago by
samuel.quentin
• 0
3
votes
6
replies
3.1k
views
Help to understand my contrast.matrix and to interpret my topTable results
contrast matrix
toptable
makecontrasts
differential gene expression
8.4 years ago
stinehedensted
• 0
2
votes
5
replies
3.2k
views
Why does limma contrast.fit produces NA's for all contrast although missing data only in one condition?
limma
contrast
missing data
lmfit
makecontrasts
updated 8.5 years ago by
Gordon Smyth
53k • written 8.5 years ago by
wewolski
▴ 10
1
vote
2
replies
1.8k
views
differentially expressed genes without contrasts
limma
toptable
makecontrasts
contrast matrix
updated 8.7 years ago by
Ryan C. Thompson
★ 7.9k • written 8.7 years ago by
hoe
• 0
0
votes
4
replies
2.2k
views
setting contrast in edgeR for time series data
rnaseq
edger
makecontrasts
updated 8.8 years ago by
Aaron Lun
★ 29k • written 8.8 years ago by
wangzhang1988
• 0
2
votes
3
replies
1.8k
views
Issues about experiment design
limma
model.matrix
makecontrasts
9.0 years ago
TFony
▴ 10
3
votes
4
replies
6.5k
views
multiple comparison using limma
limma
design matrix
makecontrasts
multiple comparisons
9.1 years ago
annabelle.congras
▴ 10
1
vote
6
replies
2.1k
views
edgeR time series DMSO correction
edger
makecontrasts
timecourse
updated 9.3 years ago by
Ryan C. Thompson
★ 7.9k • written 9.3 years ago by
aec
▴ 90
0
votes
7
replies
1.9k
views
why two different makeContrasts have the same results?
edger
makecontrasts
9.8 years ago
xiaoaozqd
• 0
8
votes
12
replies
5.0k
views
Interaction models in limma and multiple factor assessement regarding microarray statistical inference
limma
microarray
interaction model
multiple factor design
makeContrasts
updated 10.0 years ago by
Aaron Lun
★ 29k • written 10.0 years ago by
svlachavas
▴ 840
16 results • Page
1 of 1
Recent ...
Replies
Comment: Inclusion of non-coding portions of transcripts (UTR-regions and introns) within
by
Pat
• 0
Ill be honest, I didnt trust any of these services for a long time. Im a political science major and the pressure around writing is intense…
Comment: Question on processing compound protein groups in limpa
by
brianpeterson1210
• 0
Thank you[,][1] Appreciated! [1]: http://paint3d.org
Comment: Subsetting DDS object for individual conditions over time
by
A
▴ 60
Hi @atpoint Thank you for the quick reply! and this makes sense! I will confirm with a corr to see how the SFs differ but also how DE dif…
Answer: Subsetting DDS object for individual conditions over time
by
ATpoint
★ 5.0k
It would surprise my quite a bit if the size factors would differ notably between subset or not. I would always try to keep the size factor…
Comment: GSEA error
by
Adithi
• 0
Thank you so much. That makes perfect sense to me. I will work on this.
Votes
Comment: Question about using LRT test for time course experiments with DESeq2
A: DESeq2 LRT test for multi-factor designs
Answer: RNA Seq using Lrt
Answer: DESeq2 LRT Reduced Formula
Answer: DESeq2: LRT or WALD guidance
Awards
• All
Teacher
to
ATpoint
★ 5.0k
Teacher
to
Michael Love
43k
Popular Question
to
A
▴ 60
Popular Question
to
Aichatou
• 0
Popular Question
to
boczniak767
▴ 740
Locations
• All
Germany,
13 minutes ago
The city by the bay,
1 hour ago
Singapore,
2 hours ago
Australia,
5 hours ago
Melbourne, Australia,
6 hours ago
Traffic: 2341 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6