Bioconductor MakeTxDbFromGRanges

Showing : makeTxDbFromGRanges • reset

1

vote

2

replies

2.8k

views

genomicfeatures txdb makeTxDbFromGRanges

updated 8.5 years ago by Hervé Pagès 16k • written 8.5 years ago by Guido Hooiveld ★ 4.1k

2

votes

4

replies

2.1k

views

R maketxdbfrombiomart maketxdbfromgranges rstudio ensembl

updated 21 months ago by Shreyash ▴ 10 • written 6.1 years ago by rtwest • 0

0

votes

0

replies

1.8k

views

genomicfeatures gff custom genome makeTxDbFromGFF makeTxDbFromGRanges

5.8 years ago xvazquezc • 0

0

votes

1

reply

1.5k

views

genomicfeatures makeTxDbFromGRanges GenomicFeatures makeTxDbfromGRanges

updated 4.5 years ago by shepherl 4.1k • written 4.5 years ago by anze.zupanic • 0

4 results • Page 1 of 1

Recent ...

Replies

Comment: Why did PCA plots look exactly the same after adjusting for batch covariate in D by Michael Love 43k

hi, for questions about what statistical analysis approach to use, I recommend you work with a local statistician or someone familiar with …

Comment: Problems with oarfish + tximport + swish by Michael Love 43k

I'm not certain that this will work with Oarfish, the documentation only mentions Salmon and piscem. I'd use tximport for now.

Answer: Problems with oarfish + tximport + swish by Michael Love 43k

> This is fine Did tximeta() print that a matching transcriptome was found?

Answer: DESeq2 Heatmap by swbarnes2 ★ 1.4k

> However, I've been asked why the first column (vehicle/control) isn't > entirely zero on the log fold change (logFC) expression scale. …

Comment: Biomart and ensembl not working? by James W. MacDonald 67k

``` > library(biomaRt) > mart <- useEnsembl("ensembl","hsapiens_gene_ensembl") Ensembl site unresponsive, trying useast mirror > mart Objec…

Votes

Answer: Limma Interaction Effect with Covariates

Comment: DESeq2 for single cell pseudobulk processing

C: Limma: how to get same output as topTable but for all the genes ?

A: Processing agilent data by limma

A: Linear regression in DESeq2

Awards • All

Commentator to Michael Love 43k