Showing : makecdfenv • reset
2
votes
4
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1.7k
views
Help with microarray analysis (forming cdf files)
microarray affy makecdfenv
updated 9.7 years ago by 67k • written 9.7 years ago by ▴ 10
2
votes
8
replies
4.7k
views
Clariom D Human Microarray CDF file to package
simpleaffy makecdfenv
8.4 years ago jayme.rickman • 0
2
votes
1
reply
212
views
Using Affymetrix Custom Array
ArrayExpress makecdfenv AffymetrixChip gcrma GeneExpression
updated 8 weeks ago by 67k • written 8 weeks ago by • 0
1
vote
4
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3.2k
views
Missing probesets when creating Affymetrix GeneChip miRNA 4.0 CDF package using makecdfenv package
miRNA Microarray cdf makecdfenv miRNA Microarray cdf makecdfenv
updated 11.0 years ago by 67k • written 11.0 years ago by ★ 13k
0
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1
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1.2k
views
Small bug in function 'countskip.FASTA.entries' from package 'altcdfenvs'
probe affy makecdfenv matchprobes altcdfenvs probe affy makecdfenv matchprobes altcdfenvs
updated 19.2 years ago by ▴ 950 • written 19.2 years ago by ▴ 190
0
votes
5
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2.0k
views
Importing CDF file for custom array using makecdfenv
Microarray GO Survival Cancer cdf Biobase annotate genefilter affy graph makecdfenv GO
updated 18.2 years ago by ▴ 20 • written 18.2 years ago by ★ 2.2k
0
votes
2
replies
1.4k
views
Using Affymetrix PM chips with Bioconductor
Annotation cdf probe makecdfenv Annotation cdf probe makecdfenv
updated 15.8 years ago by ★ 1.2k • written 15.8 years ago by ▴ 20
0
votes
2
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1.3k
views
affy : ReadAffy() fails on HuGene-1_1-st-v1 chips
Microarray cdf affy makecdfenv PROcess oligo cycle Microarray cdf affy makecdfenv oligo
updated 13.0 years ago by 67k • written 13.0 years ago by ▴ 630
0
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0
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780
views
cdf environments for 100k mapping arrays
makecdfenv makecdfenv
20.2 years ago Christopher, Neil NIH/NCI ▴ 70
0
votes
0
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839
views
Re: makecdfenv
makecdfenv makecdfenv
21.9 years ago Rafael A. Irizarry ▴ 640
0
votes
1
reply
1.3k
views
Trouble in making the cdf package for Arabidopsis?
cdf probe makecdfenv cdf probe makecdfenv
updated 21.9 years ago by ▴ 640 • written 21.9 years ago by ▴ 20
0
votes
0
replies
1.1k
views
make CDF env (fwd)
Cancer cdf affy makecdfenv Cancer cdf affy makecdfenv
21.8 years ago Wolfgang Huber ★ 13k
0
votes
1
reply
812
views
Trouble installing 'makecdfenv'
makecdfenv makecdfenv
updated 21.0 years ago by ★ 5.5k • written 21.0 years ago by ▴ 20
0
votes
1
reply
812
views
makecdfenv not installed?
cdf makecdfenv cdf makecdfenv
updated 20.7 years ago by ★ 3.9k • written 20.7 years ago by ▴ 10
0
votes
0
replies
896
views
How to create customized probe package for GCRMA?
cdf probe affy makecdfenv gcrma cdf probe affy makecdfenv gcrma
20.7 years ago Kun Zhang ▴ 10
0
votes
1
reply
1.2k
views
How to create a custom CDF ?
mgu74av2 cdf probe affy makecdfenv gcrma mgu74av2 cdf probe affy makecdfenv gcrma
updated 20.6 years ago by ★ 1.1k • written 20.6 years ago by ▴ 10
0
votes
1
reply
809
views
makecdfenv
makecdfenv makecdfenv
updated 20.5 years ago by 67k • written 20.5 years ago by ▴ 80
0
votes
1
reply
938
views
Selecting probe pairs for analysis
cdf probe makecdfenv cdf probe makecdfenv
updated 20.4 years ago by ▴ 950 • written 20.4 years ago by ▴ 60
0
votes
1
reply
881
views
problems using cdfenv
zebrafish cdf makecdfenv simpleaffy zebrafish cdf makecdfenv simpleaffy
updated 20.3 years ago by 67k • written 20.3 years ago by ▴ 510
0
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0
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913
views
QC questions
zebrafish cdf makecdfenv simpleaffy zebrafish cdf makecdfenv simpleaffy
20.3 years ago Crispin Miller ★ 1.1k
0
votes
0
replies
912
views
Custom CDF files
ChipName cdf probe makecdfenv gcrma ChipName cdf probe makecdfenv gcrma
20.0 years ago Ken Simpson ▴ 70
0
votes
2
replies
1.1k
views
cdf environment for bovine Affy chips
cdf makecdfenv cdf makecdfenv
19.9 years ago Margaret Gardiner-Garden ▴ 160
0
votes
2
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1.1k
views
makecdfenv error
cdf makecdfenv cdf makecdfenv
updated 19.8 years ago by 67k • written 19.8 years ago by ▴ 10
0
votes
1
reply
1.2k
views
solicitation for Affy bovine cdf environment
cdf affy makecdfenv cdf affy makecdfenv
updated 19.8 years ago by 67k • written 19.8 years ago by ▴ 10
0
votes
2
replies
1.2k
views
Missing probesets
cdf affy makecdfenv cdf affy makecdfenv
updated 19.7 years ago by ★ 5.5k • written 19.7 years ago by ▴ 110
0
votes
1
reply
950
views
makecdfenv bug
GO makecdfenv GO makecdfenv
updated 19.7 years ago by ★ 7.4k • written 19.7 years ago by ▴ 140
0
votes
0
replies
985
views
make own CDF package probelm, error:couldn't find function "make.cdf.env"
Microarray Cancer cdf probe makecdfenv Microarray Cancer cdf probe makecdfenv
19.7 years ago James W. MacDonald 67k
0
votes
0
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966
views
make own CDF package probelm, error:couldn't find function "make.cdf.env"
cdf probe makecdfenv cdf probe makecdfenv
19.7 years ago Seth Falcon ★ 7.4k
0
votes
1
reply
1.2k
views
affymetrix CDF file problem
cdf makecdfenv cdf makecdfenv
updated 19.6 years ago by 67k • written 19.6 years ago by ▴ 80
0
votes
1
reply
774
views
makecdfenv makePlatformDesign bigendian
makecdfenv makePlatformDesign makecdfenv makePlatformDesign
updated 19.4 years ago by ★ 7.4k • written 19.4 years ago by ▴ 30
0
votes
0
replies
1.1k
views
How do I install custom made CDF in Bioconductor
cdf makecdfenv cdf makecdfenv
19.4 years ago Ruppert Valentino ▴ 270
0
votes
1
reply
972
views
Fusarium CDF
cdf makecdfenv cdf makecdfenv
updated 18.7 years ago by 67k • written 18.7 years ago by ▴ 30
0
votes
0
replies
877
views
makecdfenv, bg.correct
affy makecdfenv affy makecdfenv
18.7 years ago Justin Borevitz ▴ 170
0
votes
5
replies
1.8k
views
Affymetrix Promoter tiling array
cdf makecdfenv cdf makecdfenv
18.4 years ago Wu, Xiwei ▴ 350
0
votes
2
replies
2.7k
views
Importing CDF file for custom array using makecdfenv
cdf affy makecdfenv cdf affy makecdfenv
updated 18.4 years ago by ▴ 120 • written 18.4 years ago by ▴ 340
0
votes
1
reply
1.2k
views
new user trying to create a cdf package for custom array
cdf probe affy makecdfenv cdf probe affy makecdfenv
updated 18.4 years ago by 67k • written 18.4 years ago by ▴ 20
0
votes
1
reply
1.3k
views
warning from make.cdf.package - FYI
GO Survival cdf Biobase annotate genefilter graph makecdfenv limma gcrma matchprobes GO
updated 18.2 years ago by 67k • written 18.2 years ago by ★ 2.2k
0
votes
4
replies
1.4k
views
makecdfenv
cdf makecdfenv cdf makecdfenv
updated 18.1 years ago by 25k • written 18.1 years ago by ★ 13k
0
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0
replies
983
views
(no subject)
cdf affy makecdfenv convert cdf affy makecdfenv convert
18.1 years ago Charlyn Suarez ▴ 10
0
votes
1
reply
1.3k
views
making a cdf file for expression analysis on a tiling array
cdf affy makecdfenv cdf affy makecdfenv
updated 17.9 years ago by 21k • written 17.9 years ago by ▴ 60
0
votes
4
replies
2.0k
views
affyPLM and exon array question
cdf affy makecdfenv affyPLM cdf affy makecdfenv affyPLM
updated 17.7 years ago by ★ 1.2k • written 17.7 years ago by ▴ 30
0
votes
3
replies
1.9k
views
CDF package in R (windows)
cdf affy makecdfenv cdf affy makecdfenv
17.6 years ago Salim Charaniya ▴ 20
0
votes
0
replies
907
views
Questions on getting information from affy's CEL, CDF or 1lq file s
cdf probe makecdfenv cdf probe makecdfenv
21.9 years ago Wang, Hui ▴ 170
0
votes
9
replies
2.1k
views
gcrma error? - linked to makeProbePackage ?
cdf probe affy makecdfenv gcrma matchprobes cdf probe affy makecdfenv gcrma matchprobes
updated 17.5 years ago by 67k • written 17.5 years ago by ▴ 90
0
votes
2
replies
1.3k
views
how to make probe environments for use with GCRMA
cdf makecdfenv gcrma cdf makecdfenv gcrma
updated 17.5 years ago by ▴ 50 • written 17.5 years ago by ▴ 290
0
votes
1
reply
1.0k
views
error in makecdfenv
makecdfenv makecdfenv
updated 17.4 years ago by 67k • written 17.4 years ago by ▴ 130
0
votes
1
reply
1.1k
views
affyPLM and exon array question
cdf affy makecdfenv affyPLM cdf affy makecdfenv affyPLM
updated 17.3 years ago by ★ 1.2k • written 17.3 years ago by ★ 2.4k
0
votes
5
replies
1.4k
views
makecdfenv and multi-mapping probes on Mouse Gene 1.0 ST array
cdf probe makecdfenv cdf probe makecdfenv
updated 16.7 years ago by 21k • written 16.7 years ago by ★ 2.0k
0
votes
1
reply
957
views
gcrma problem
cdf affy makecdfenv gcrma cdf affy makecdfenv gcrma
updated 16.4 years ago by 67k • written 16.4 years ago by ▴ 40
0
votes
1
reply
1.4k
views
Prokaryotic_Rhodobacter capsulatus GEP
Epigenetics cdf affy makecdfenv plier affxparser preprocessCore Epigenetics cdf affy
updated 16.1 years ago by ▴ 140 • written 16.1 years ago by 67k
50 results • Page 1 of 1
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Answer: promoters_txdb <- promoters(txdb, upstream = 2000) is not 2000 by James W. MacDonald 67k
If you use `promoters` and do not provide an argument for something that has a default, you will get the default argument. Your last call t…
Comment: org.Hs.eg.db issue by k.panov • 0
installed R on another PC, works perfectly. ergo, problem outside of R probably..... :-(
Comment: MBDseq analysis using qsea package by Lukas ▴ 20
Hi, I checked in with Matthias and here is his response: You need to indicate "samples": "The indices of the samples for which individu…
Comment: DESeq2 analysis with transcript counts by sindhuri • 0
Thank you for the response. Currently I am using the R studio for analysis and Im running DESeq2 for analysis of the **transcript counts.ts…
Comment: iam not able to do retrive data using GEOquery R package by James W. MacDonald 67k
Another alternative is to use the `GEOmetadb` package ([vignette here)][1], which will allow you to make queries to identify GEO datasets t…
Votes
A: Linear regression in DESeq2
Answer: Is there any chance to solve "the model matrix is not full rank" in DESeq2?
Answer: Issue carrying out DiffBind Analysis at a predefined peak set
Answer: Differential variability modelling with vst() expression
Answer: Differential variability modelling with vst() expression
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