Bioconductor Makecontrasts

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1.3k

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designmatrices differentialexpression makeContrasts limma model.matrix

2.0 years ago mohammedtoufiq91 ▴ 10

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1.1k

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makeContrasts edgeR

updated 2.7 years ago by Steve Lianoglou ★ 13k • written 2.7 years ago by HS ▴ 10

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861

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microarray dge matrix makecontrasts limma

updated 3.8 years ago by Gordon Smyth 50k • written 3.8 years ago by June. ▴ 10

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1.9k

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diffrential expression limma makeContrasts

updated 5.8 years ago by Gordon Smyth 50k • written 5.8 years ago by S.Bamopoulos ▴ 10

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920

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rnaseq edgeR makecontrasts interactions

updated 5.8 years ago by Aaron Lun ★ 28k • written 5.8 years ago by David R ▴ 90

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5.0k

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limma model.matrix makecontrasts

updated 5.8 years ago by Gordon Smyth 50k • written 5.8 years ago by enricoferrero ▴ 660

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724

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deseq2 makecontrasts

updated 6.4 years ago by Michael Love 41k • written 6.4 years ago by samuel.quentin • 0

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contrast matrix toptable makecontrasts differential gene expression

6.6 years ago • updated 6.5 years ago stinehedensted • 0

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2.3k

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limma contrast missing data lmfit makecontrasts

updated 6.6 years ago by Gordon Smyth 50k • written 6.6 years ago by wewolski ▴ 10

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1.3k

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limma toptable makecontrasts contrast matrix

updated 6.8 years ago by Ryan C. Thompson ★ 7.9k • written 6.8 years ago by hoe • 0

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1.6k

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rnaseq edger makecontrasts

updated 6.9 years ago by Aaron Lun ★ 28k • written 6.9 years ago by wangzhang1988 • 0

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limma model.matrix makecontrasts

7.1 years ago TFony ▴ 10

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limma design matrix makecontrasts multiple comparisons

7.2 years ago annabelle.congras ▴ 10

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1.4k

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edger makecontrasts timecourse

updated 7.4 years ago by Ryan C. Thompson ★ 7.9k • written 7.4 years ago by aec ▴ 90

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edger makecontrasts

7.9 years ago xiaoaozqd • 0

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limma microarray interaction model multiple factor design makeContrasts

updated 8.1 years ago by Aaron Lun ★ 28k • written 8.1 years ago by svlachavas ▴ 830

16 results • Page 1 of 1

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Comment: Memory errors using read.bismark? by Peter Hickey ▴ 690

If you process serially (i.e. with `BPPARAM = SerialParam()`) then you might be okay. The final object will be on the order of 250 GB in-me…

Answer: blockwiseModule crashes in the end and doesn't generate modules by xaweh28128 • 0

Test your word skills and see if you can crack the code in today's Wordle puzzle. [Nytimes wordle](https://wordlenytimes.net/quordle-game/)…

Comment: Memory errors using read.bismark? by Juan Higareda • 0

Thanks for the answer. Actually, processing one file and keeping it in memory wasn't the problem, is more processing all the 15 files to bu…

Answer: Differentially expressed genes in monocle pseudotime by Gordon Smyth 50k

You might try the methods in this paper: Cheng J, Smyth GK*, Chen Y* (2023). Unraveling the timeline of gene expression: A pseudotempora…

Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa by Seyram M. • 0

Thank you Michael for your attention to my question. I am truly grateful. I subsetted the data using lines of codes to include only the g…

Votes

Comment: Not fully paired differential gene expression analysis

Comment: [DiffBind] Obtaining normalization factors

Answer: ComplexHeatmap: add pch to rowAnnotation when the input is a data frame with var

Comment: Not fully paired differential gene expression analysis

Answer: GSVA error

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