Bioconductor Maketxdbfromgranges

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genomicfeatures makeTxDbFromGRanges GenomicFeatures makeTxDbfromGRanges

updated 3.2 years ago by shepherl 3.5k • written 3.2 years ago by anze.zupanic • 0

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genomicfeatures gff custom genome makeTxDbFromGFF makeTxDbFromGRanges

4.5 years ago xvazquezc • 0

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R maketxdbfrombiomart maketxdbfromgranges rstudio ensembl

updated 5 months ago by Shreyash • 0 • written 4.8 years ago by rtwest • 0

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genomicfeatures txdb makeTxDbFromGRanges

updated 7.2 years ago by Hervé Pagès 16k • written 7.2 years ago by Guido Hooiveld ★ 3.7k

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Comment: Mixed up sample info with plotPCA by Michael Love 40k

Just as a note, if the sample info table had been named (that is `rownames(sampleInfo)` not `NULL`, DESeq2 would have been able to detect t…

Comment: Mixed up sample info with plotPCA by sara.jacobson • 0

You were correct. The order of my samples in my sample info-file did not match the order of the samples in my count data file. Thank you!

Answer: Delete all profiles by shepherl 3.5k

Please send requests to webmaster@bioconductor.org providing more details like the full emails associated with the accounts. Thank you

Comment: Mixed up sample info with plotPCA by Michael Love 40k

Check colnames of count data. I think you are providing these in different order to DESeq2.

Comment: Mixed up sample info with plotPCA by sara.jacobson • 0

Ok, thank you. This is everything from my session: > library("ggplot2") > library("dplyr") Attaching package: 'dplyr' …

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Answer: Mouse to Human Genes using bioconductor

Mouse to Human Genes using bioconductor

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Answer: How do I merge a list of GRanges?

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