Biostar Maketxdbfromucsc

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genomicfeatures maketxdbfromucsc refseq

updated 6.7 years ago by Hervé Pagès 16k • written 6.7 years ago by Sebastien Vigneau ▴ 10

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genomicfeatures R bioconductor maketxdbfromucsc

updated 4.2 years ago by Hervé Pagès 16k • written 4.2 years ago by alanchenslm • 0

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genomicfeatures makeTxDbFromUCSC

updated 7.4 years ago by Michael Lawrence 11k • written 7.9 years ago by federico.comoglio ▴ 100

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genomicfeatures txdb maketxdbfromucsc maketxdbfrombiomart rtracklayer

updated 5.3 years ago by Michael Lawrence 11k • written 5.3 years ago by james.dalgleish ▴ 30

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GenomicFeatures makeTxDbFromUCSC R

4.4 years ago DMA1 ▴ 10

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genomicfeatures maketxdbfromucsc

5.3 years ago rbacher ▴ 20

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GenomicFeatures makeTxDbFromUCSC

updated 4.7 years ago by shepherl 3.4k • written 4.7 years ago by warrena • 0

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Comment: how can I do gene differential analysis on data after vst by linouhao ▴ 20

I'm so happy and surprised to get your professional reply. library(limma) library(edge) counts <- read.csv("raw_counts.cs…

Comment: can negative value microarray matrix data analysed by limma directly by Gordon Smyth 47k

The discussion on research gate is not of much value.

Answer: can negative value microarray matrix data analysed by limma directly by Gordon Smyth 47k

limma is routinely used for all the preprocessing methods that you mentioned, and some of them are covered in the limma User's Guide. Not …

Answer: how can I do gene differential analysis on data after vst by Gordon Smyth 47k

Differential expression analysis of vst values can be performed by limma-trend.

Answer: Performing DE analysis using edgeR for PhIP-seq data with multiple samples, some by Gordon Smyth 47k

edgeR does not require replicates for every group, so there is no problem with that. I can't make any comments on your code however. You d…

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Answer: Failed to install Biobase

Answer: Latest version of ggtree (3.6.2) unavailable on Anaconda. Only 3.6.0 exists.

BiocGenerics package: 404 error during R shiny app deployment

Comment: does anyone how to create rarefaction curves from a phyloseq object?

Answer: HISAT2 mapping

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Prophet to linouhao ▴ 20