Bioconductor Maketxdbfromucsc

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genomicfeatures makeTxDbFromUCSC

updated 7.6 years ago by Michael Lawrence 11k • written 8.1 years ago by federico.comoglio ▴ 100

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genomicfeatures txdb maketxdbfromucsc maketxdbfrombiomart rtracklayer

updated 5.5 years ago by Michael Lawrence 11k • written 5.5 years ago by james.dalgleish ▴ 30

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genomicfeatures maketxdbfromucsc refseq

updated 6.9 years ago by Hervé Pagès 16k • written 6.9 years ago by Sebastien Vigneau ▴ 10

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genomicfeatures R bioconductor maketxdbfromucsc

updated 4.4 years ago by Hervé Pagès 16k • written 4.4 years ago by alanchenslm • 0

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GenomicFeatures makeTxDbFromUCSC

updated 4.9 years ago by shepherl 3.5k • written 4.9 years ago by warrena • 0

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genomicfeatures maketxdbfromucsc

5.5 years ago rbacher ▴ 20

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GenomicFeatures makeTxDbFromUCSC R

4.6 years ago DMA1 ▴ 10

7 results • Page 1 of 1

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Comment: Interpret plot from DiffBind by Chris • 0

I sorted Fold decreasing. When I filter out genes with fold > 2.5 and filter out genes with fold < -2.5 and got 1287 genes appear in both s…

Comment: Interpret plot from DiffBind by Chris • 0

Thank you so much. I think the function is `dba.report()`. more_open_in_disease: 79113 more_closed_in_disease: 36828 So there are 79113 pea…

Comment: Interpret plot from DiffBind by Chris • 0

Hi Rory, when I run your code, I got this error: Error: unexpected ')' in: " matrices_color=list(c("white", "ma…

Comment: Can DESeq2 handle huge variations in sequencing depth among samples? by Gopinath • 0

Thanks for your suggestion, Michael. I will try that strategy.

Comment: Error with IsoformSwitchAnalyzer: analyzePFAM by Callum • 0

It seems that the problem doesn't occur when the input file is significantly shortened to ~20 transcripts! Please help

Votes

A: ggbio error: Objects of type OrganismDb not supported by autoplot

Answer: DeSEQ 2 Error: some values in assay are negative

DESeq2 Error from Installing a Package

Answer: Using PEER to identify hidden confounders in RNA-seq data (not working)

Comment: Error: biomaRt has encountered an unexpected server error.

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