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maplot
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0
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2
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876
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Why is my log fold change not centered around 0 and lower?
DESeq2
MAplot
updated 13 months ago by
ATpoint
★ 4.0k • written 13 months ago by
Michael
• 0
10
votes
8
replies
1.9k
views
MA plot
MAplot
14 months ago
Nathalie
▴ 20
0
votes
3
replies
2.1k
views
Understanding MA plot distortion
DESeq2
MAplot
deseq
updated 3.1 years ago by
Michael Love
41k • written 3.1 years ago by
sp
• 0
1
vote
1
reply
755
views
LFCshrink function understanding
deseq2
MAplot
lfcshrink
updated 3.6 years ago by
Michael Love
41k • written 3.6 years ago by
evelas13
• 0
1
vote
2
replies
572
views
Label points on DESeq2 MA plot with interval list
deseq2
maplot
annotation
updated 4.4 years ago by
Michael Love
41k • written 4.4 years ago by
rbronste
▴ 60
2
votes
2
replies
2.4k
views
DiffBind's MA plots for ChIP-seq - how to properly interpret normalization from them?
diffbind
R
MAplot
Chipseq
updated 4.8 years ago by
Rory Stark
★ 5.1k • written 4.8 years ago by
melnuesch
▴ 10
0
votes
2
replies
1.3k
views
MA plot scattering pattern
deseq2
MAplot
5.3 years ago
avitalwasser
• 0
5
votes
8
replies
1.2k
views
High normalized counts on DESeq2 MAplot
deseq2
maplot
updated 5.4 years ago by
James W. MacDonald
65k • written 5.4 years ago by
rbronste
▴ 60
0
votes
4
replies
1.1k
views
DESeq2 MA plot normalisation Issue
deseq2
normalization
maplot
rnaseq
updated 5.4 years ago by
Michael Love
41k • written 5.4 years ago by
ma619
• 0
0
votes
1
reply
1.5k
views
MA plot interpretation .
MAPLOT
DESEQ2
RNASEQ
updated 6.1 years ago by
Michael Love
41k • written 6.1 years ago by
phurbusang
• 0
2
votes
1
reply
2.0k
views
Error in DESeq2 plotMA from object subset
deseq2
maplot
subset
updated 6.2 years ago by
Michael Love
41k • written 6.2 years ago by
rbronste
▴ 60
2
votes
4
replies
1.5k
views
DiffBind MA plot
diffbind
maplot
updated 6.2 years ago by
Rory Stark
★ 5.1k • written 6.2 years ago by
grundelphine
• 0
1
vote
2
replies
1.2k
views
DiffBind DESeq2 MA plot skewed
diffbind
deseq2
maplot
updated 6.5 years ago by
Rory Stark
★ 5.1k • written 6.5 years ago by
rbronste
▴ 60
0
votes
3
replies
2.6k
views
DESeq2 MA plot look different
deseq2
maplot
updated 6.5 years ago by
Michael Love
41k • written 6.5 years ago by
jshouse
▴ 10
3
votes
6
replies
1.8k
views
Clarification MAplot and FDR in EdgeR
edgeR
MAplot
rnaseq
differential gene expression
updated 7.6 years ago by
Gordon Smyth
50k • written 7.6 years ago by
joseph.bergenstrahle
• 0
0
votes
0
replies
1.2k
views
error while running MAplot
MAplot
rnaseq
cummerbund
8.0 years ago
kritikamish99
▴ 10
16 results • Page
1 of 1
Recent ...
Replies
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Comment: DEG Filtering
by
Gordon Smyth
50k
I already know that you using CEL files because you need them to perform RMA normalization. Yes, you should follow the advice I have alread…
Votes
Answer: DESeq2 "Contrast" option
Answer: error in ChAMP loading file
Circumvent creating .ff files in the working directory when using genotype.Illumina() function
Answer: Problem with maplot {affy} method when using rma {affy} method output as its inp
Answer: Microarray Limma Model fitting and DEG
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Pierre Lindenbaum
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