Showing : marray • reset
1
vote
2
replies
1.8k
views
summarization for G4110B two colors agilent array: how to?
marray agilent twochannel normalization limma
updated 8.0 years ago by 47k • written 8.0 years ago by ▴ 240
0
votes
0
replies
1.1k
views
How does one deal with spatial effects detected on single channel microarrays?
Microarray Normalization hu6800 affy gcrma marray nnNorm Harshlight Microarray hu6800
9.3 years ago Scott Robinson ▴ 130
0
votes
6
replies
1.2k
views
How does one deal with spatial effects detected on single channel microarrays?
Microarray Normalization affy marray nnNorm Microarray Normalization affy marray nnNorm
updated 9.4 years ago by ★ 3.9k • written 9.4 years ago by ★ 12k
0
votes
0
replies
738
views
Package/Function for Single Channel Microarray Spatial Normalization?
marray OLIN marray OLIN
9.4 years ago Guest User ★ 12k
0
votes
1
reply
1.5k
views
How to subtract the background from foreground values in GenePix files
Normalization limma marray Normalization limma marray
updated 9.5 years ago by 62k • written 9.5 years ago by ★ 12k
0
votes
3
replies
995
views
Normalize background on marray Agilent object
Normalization limma PROcess marray Normalization limma PROcess marray
updated 9.5 years ago by 47k • written 9.6 years ago by ▴ 50
0
votes
3
replies
1.2k
views
Normalize background on marray Agilent object
marray marray
9.6 years ago Guillermo Marco Puche ▴ 50
0
votes
0
replies
845
views
Agilent Dual channel array input & marray
marray marray
9.7 years ago Guillermo Marco Puche ▴ 50
0
votes
1
reply
925
views
Unexpected output from Limma background subtraction & Normalization
Microarray Normalization limma marray puma Microarray Normalization limma marray puma
updated 23 months ago by 47k • written 9.8 years ago by ▴ 20
0
votes
1
reply
957
views
Unexpected Results from Limma background subtraction & marray normalizatoin
Microarray Normalization limma marray Microarray Normalization limma marray
updated 23 months ago by 47k • written 9.8 years ago by ▴ 20
0
votes
0
replies
751
views
NAs introduced by marrayNorm after background subtraction with Limma
Normalization probe limma marray Normalization probe limma marray
9.8 years ago Guest User ★ 12k
0
votes
0
replies
1.0k
views
normalizing two-color Agilent data from GEO...
marray marray
10.3 years ago Alan Derr ▴ 50
0
votes
1
reply
1.7k
views
Error by using gpr data with marray
limma marray ArrayExpress limma marray ArrayExpress
updated 10.9 years ago by 13k • written 10.9 years ago by ★ 12k
0
votes
0
replies
862
views
Error with read.SMD() of marray
marray marray
11.3 years ago Guest User ★ 12k
0
votes
0
replies
739
views
load single-channel microarray
marray marray
11.4 years ago Paz Tapia Ramirez ▴ 150
0
votes
2
replies
845
views
M values; and dist functions
marray marray
updated 11.8 years ago by 13k • written 11.8 years ago by ▴ 560
0
votes
2
replies
1.2k
views
gcrma - u133aaofav2probe error
Microarray gcrma marray Microarray gcrma marray
updated 11.9 years ago by 62k • written 11.9 years ago by ▴ 10
0
votes
2
replies
4.6k
views
Error in Heatmap: Could not find function "heatmap.2"
PROcess marray PROcess marray
updated 12.5 years ago by ▴ 830 • written 12.5 years ago by ▴ 40
0
votes
0
replies
704
views
maPalette() and the number of colors returned (bug?)
marray marray
12.6 years ago Ali Tofigh ▴ 30
0
votes
1
reply
863
views
Could I use "genefilter" package for MArray data ?
genefilter limma marray genefilter limma marray
updated 12.8 years ago by 13k • written 12.8 years ago by ▴ 230
0
votes
0
replies
664
views
MArray into data.frame for SPIA package
limma marray SPIA limma marray SPIA
12.9 years ago Gordon Smyth 47k
0
votes
11
replies
1.3k
views
Issue with limma and normalization of Agilent data generated with a 20-bit scan
Normalization limma marray Normalization limma marray
updated 12.9 years ago by 47k • written 12.9 years ago by ▴ 130
0
votes
1
reply
1.1k
views
Bug in vsn2
limma marray limma marray
updated 13.5 years ago by 13k • written 13.5 years ago by ▴ 50
0
votes
1
reply
825
views
Summarization of cDNA microarray data
marray marray
updated 13.8 years ago by 21k • written 13.8 years ago by ▴ 10
0
votes
1
reply
885
views
Agilent miRNA
miRNA marray miRNA marray
updated 13.9 years ago by ▴ 40 • written 13.9 years ago by ▴ 200
0
votes
1
reply
884
views
problems with marray and gpr files
marray marray
updated 14.0 years ago by 25k • written 14.0 years ago by ▴ 40
0
votes
0
replies
679
views
Moe430A and Moe430B join
moe430a moe430b mouse4302 gcrma marray moe430a moe430b mouse4302 gcrma marray
14.5 years ago Matyas Flemr ▴ 10
0
votes
6
replies
1.3k
views
limma and marray data import problem
Microarray Normalization limma PROcess marray Microarray Normalization limma PROcess
updated 14.7 years ago by 47k • written 14.7 years ago by ▴ 90
0
votes
2
replies
1.0k
views
Fwd: Question about normalizing one color Agilent array using loess
Microarray Genetics Normalization limma marray Microarray Genetics Normalization limma
updated 14.7 years ago by 13k • written 14.7 years ago by ▴ 30
0
votes
1
reply
694
views
Input to vsn or limma of genepix file missing 635 columns
Annotation Normalization Biobase affy vsn limma marray convert Annotation Normalization
updated 14.7 years ago by ▴ 30 • written 14.7 years ago by 47k
0
votes
1
reply
1.1k
views
How to read a data.frame into limma or marray
Microarray Normalization limma marray Microarray Normalization limma marray
updated 15.2 years ago by ▴ 450 • written 15.2 years ago by ▴ 160
0
votes
1
reply
365
views
One directional spatial normalisation for microarray data
marray marray
updated 15.2 years ago by ★ 2.4k • written 15.2 years ago by ★ 3.4k
0
votes
3
replies
1.1k
views
tweaks for the heatmap ()?
Clustering marray Clustering marray
updated 15.2 years ago by ▴ 510 • written 15.2 years ago by ▴ 270
0
votes
4
replies
922
views
Agilent CGH data
CGH arrayQuality marray CGH arrayQuality marray
updated 15.3 years ago by 21k • written 15.3 years ago by ▴ 230
0
votes
1
reply
935
views
DNAcopy package, craeting CNA object
CGH marray DNAcopy CGH marray DNAcopy
updated 15.4 years ago by 21k • written 15.4 years ago by ▴ 230
0
votes
1
reply
823
views
creating a copy number array data object in DNA copy
GO marray GO marray
updated 15.4 years ago by 62k • written 15.4 years ago by ▴ 230
0
votes
8
replies
2.5k
views
Reading Agilent files using read.maimages
Survival DynDoc genefilter tkWidgets affy vsn marray convert ArrayExpress Survival affy
updated 15.5 years ago by ▴ 20 • written 15.5 years ago by ▴ 100
0
votes
1
reply
2.3k
views
RE : create an new AnnotatedDataFrame
Annotation Survival Yeast Biobase genefilter tkWidgets marray convert arrayMagic affyio
updated 15.5 years ago by 25k • written 15.5 years ago by ▴ 30
0
votes
1
reply
1.3k
views
create an new AnnotatedDataFrame
Survival Yeast Biobase genefilter tkWidgets marray convert arrayMagic affyio Survival
updated 15.5 years ago by 25k • written 15.5 years ago by ▴ 30
0
votes
2
replies
940
views
Error with arrayQuality
Microarray Cancer hexbin limma marray convert Microarray Cancer hexbin limma marray
updated 15.5 years ago by ★ 7.4k • written 15.5 years ago by ▴ 50
0
votes
1
reply
819
views
marray layout
Microarray marray Microarray marray
updated 15.6 years ago by ▴ 130 • written 15.6 years ago by ▴ 40
0
votes
0
replies
686
views
tcl/tk dependency of biocLite
Genetics Cancer tkWidgets widgetTools marray Genetics Cancer tkWidgets widgetTools marray
15.7 years ago grischa tödt ▴ 30
0
votes
1
reply
840
views
tcl/tk and biocLite
Genetics Cancer tkWidgets widgetTools marray Genetics Cancer tkWidgets widgetTools marray
updated 15.7 years ago by ★ 7.4k • written 15.7 years ago by ▴ 30
0
votes
0
replies
734
views
marray and limma error with lmFit
Microarray limma marray Microarray limma marray
15.8 years ago Gordon Smyth 47k
0
votes
0
replies
884
views
marray and limma error with lmFit
Microarray Biobase DynDoc widgetTools limma arrayQuality marray convert Microarray DynDoc
15.8 years ago Paquet, Agnes ▴ 500
0
votes
2
replies
1.2k
views
marray: problems loading genepix-files
marray marray
updated 15.9 years ago by ▴ 130 • written 15.9 years ago by ▴ 310
0
votes
1
reply
871
views
Help with GenePix files
Normalization marray GLAD Normalization marray GLAD
updated 15.9 years ago by ★ 7.4k • written 15.9 years ago by ▴ 310
0
votes
0
replies
1.3k
views
marray and limma error with lmFit
limma marray limma marray
15.9 years ago Gordon Smyth 47k
0
votes
0
replies
715
views
normalizeBetweenArrays gives an error
Normalization marray convert Normalization marray convert
16.2 years ago Gordon Smyth 47k
0
votes
0
replies
761
views
problems reading Illumina files using BeadExplorer
affy widgetTools limma marray convert affyio BeadExplorer affy widgetTools limma marray
16.3 years ago Vitalina Komashko ▴ 10
50 results • Page 1 of 1
Recent ...
Replies
Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper by Gordon Smyth 47k
Am I understanding correctly that you have 24 RNA-seq libraries in total, 6 from the pooled samples and 18 from regular samples with biolog…
Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper by k.roelfs • 0
I'm sorry, I know it is kinda confusing... We have 6 pools in total: Phenotype A: T1a, T2, T1b, T1c Phenotype B: T1, T2 Each pool consist…
Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper by Gordon Smyth 47k
Sorry, I don't understand your experiment. You are reading the edgeR Section on on what to do without replicates, but your experiment appe…
Answer: MA plot by Nathalie • 0
Thank you very much for your help and comments. There is errors in my file. BaseMean is BaseMeanLog2. I don't know how insert a file.
Comment: Design for DE analysis in tidybulk by Michael Love 39k
The mapping from what you want to a contrast is a long conversation. You can make pairwise comparisons or numeric contrasts or really anyth…
Votes
Volcano Plot in R
Answer: Replicating iDEP parameters in DESeq2; two conditions and an interaction term.
Answer: Replicating iDEP parameters in DESeq2; two conditions and an interaction term.
Answer: MA plot
Answer: MA plot
Awards • All
Teacher to James W. MacDonald 62k
Popular Question to Assa Yeroslaviz ★ 1.5k
Scholar to ATpoint ★ 2.0k
Popular Question to adR ▴ 20
Popular Question to thkapell ▴ 10
Locations • All
India, 2 minutes ago
WEHI, Melbourne, Australia, 8 minutes ago
United States, 9 minutes ago
Cumbernauld, 18 minutes ago
United States, 24 minutes ago
Traffic: 469 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6