Showing : marray • reset
1
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summarization for G4110B two colors agilent array: how to?
marray agilent twochannel normalization limma
updated 9.3 years ago by 50k • written 9.3 years ago by ▴ 240
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0
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1.1k
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marray and limma error with lmFit
Microarray Biobase DynDoc widgetTools limma arrayQuality marray convert Microarray DynDoc
17.0 years ago Paquet, Agnes ▴ 500
0
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1
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623
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marray or marrayClasses and others?
marray marray
updated 19.9 years ago by ▴ 920 • written 19.9 years ago by ▴ 10
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1
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686
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MA plots without bg correction (mArray)
marray marray
updated 20.4 years ago by ▴ 920 • written 20.4 years ago by ▴ 40
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2
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756
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More than one weight with marrayRaw class
marray marray
updated 20.5 years ago by 50k • written 20.5 years ago by ▴ 90
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1
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1.2k
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using marrayInput package with GenePix .gpr file - read.GenePix()
GO marray GO marray
updated 20.5 years ago by ▴ 920 • written 20.5 years ago by ▴ 10
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Re: [Fwd: Bioc Book Chapter] (Gordon K Smyth) Bioconductor Digest, Vol 11, Issue 38
Microarray Preprocessing limma marray convert oligo Microarray Preprocessing limma marray
20.2 years ago Christopher Wilkinson ▴ 140
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2
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810
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Help for make a dendrogram (philogenetic tree)
limma marray limma marray
updated 20.4 years ago by 50k • written 20.4 years ago by ▴ 770
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6
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1.3k
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(no subject)
marray marray
updated 20.2 years ago by 65k • written 20.2 years ago by ▴ 200
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0
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791
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Agilent data Normalization
Normalization GO marray Normalization GO marray
20.4 years ago Joel Parker ▴ 10
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1
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608
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Read ImaGene output files...
limma marray limma marray
updated 20.4 years ago by 50k • written 20.4 years ago by ▴ 150
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4
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1.0k
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[maNorm] Normalization a complex experiment...
Normalization limma marray Normalization limma marray
updated 20.3 years ago by 50k • written 20.3 years ago by ▴ 770
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1
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962
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Problem with marray
marray marray
20.3 years ago Patrice Godard ▴ 20
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5
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1.2k
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Problem with read.marrayRaw
marray marray
updated 20.3 years ago by ▴ 80 • written 20.3 years ago by ▴ 200
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0
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584
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Help for make a dendrogram (philogenetic tree)
limma marray limma marray
20.4 years ago Marcelo Luiz de Laia ▴ 770
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0
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868
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Re: [Fwd: Bioc Book Chapter] (Gordon K Smyth) Biocondu ctor Digest, Vol 11, Issue 38
Microarray Preprocessing limma marray convert oligo Microarray Preprocessing limma marray
20.2 years ago michael watson IAH-C ★ 3.4k
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1
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733
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t test
Microarray marray Microarray marray
20.2 years ago Binita Dutta ▴ 100
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7
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1.4k
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M vs A plot
Microarray Normalization Regression Cancer marray Microarray Normalization Regression
updated 20.2 years ago by ★ 6.0k • written 20.2 years ago by ★ 2.0k
0
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1
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792
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Problems with BioConductor
marray marray
updated 19.7 years ago by ★ 3.9k • written 19.7 years ago by ▴ 10
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0
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686
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marrayClasses packages
marray marray
20.2 years ago Gu, Joyce ▴ 20
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1
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1.3k
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Reading data from SMD database
marray marray
updated 20.2 years ago by ▴ 310 • written 20.2 years ago by ▴ 220
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0
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700
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normalization data with ..txt or ..xls file by marray or limma
Microarray Normalization limma marray Microarray Normalization limma marray
20.2 years ago rwin qian ▴ 50
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2
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1.4k
views
normalization data with ..txt or ..xls file by marray or limma
Normalization limma marray Normalization limma marray
20.2 years ago • updated 20.1 years ago Matthew Ritchie ▴ 1000
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1
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670
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problem for dealing with replicated spots in slide
Microarray marray Microarray marray
updated 20.1 years ago by 50k • written 20.1 years ago by ▴ 60
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3
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1.1k
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Confusion for choosing package for microarray data analysis
Microarray limma siggenes marray Microarray limma siggenes marray
updated 20.1 years ago by ▴ 140 • written 20.1 years ago by ▴ 60
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1
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844
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Bug in marray???
marray marray
updated 20.0 years ago by ▴ 920 • written 20.0 years ago by ▴ 40
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0
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932
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reading .gpr w/limma - error (bug??)
marray marray
20.0 years ago Mayte Suarez-Farinas ▴ 300
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1
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1.5k
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import cDNA microarray data into R
marray marray
updated 20.0 years ago by ▴ 920 • written 20.0 years ago by ▴ 10
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0
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624
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Normalization of Intensities
gcrma marray gcrma marray
19.9 years ago Naomi Altman ★ 6.0k
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1
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827
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bug in maNormMain ?
Normalization marray Normalization marray
updated 19.9 years ago by ★ 3.9k • written 19.9 years ago by ▴ 100
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0
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905
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marray and limma error with lmFit
Microarray limma marray Microarray limma marray
17.0 years ago Gordon Smyth 50k
0
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6
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1.5k
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background correction with cDNA array data
marray marray
updated 18.5 years ago by ▴ 10 • written 18.5 years ago by ▴ 60
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1
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745
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marray error message
marray marray
updated 19.8 years ago by ▴ 90 • written 19.8 years ago by ▴ 320
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1
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803
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read.marrayRaw()
marray ASSIGN marray ASSIGN
updated 19.7 years ago by ▴ 920 • written 19.7 years ago by ▴ 130
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1
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835
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Normalization with marray on technical replicates
Normalization Cancer marray Normalization Cancer marray
updated 19.7 years ago by ▴ 920 • written 19.7 years ago by ★ 2.0k
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4
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1.2k
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problem reading genepix files using both marray andlimma functions
limma marray limma marray
updated 19.7 years ago by ▴ 60 • written 19.7 years ago by ★ 3.4k
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5
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1.2k
views
problem reading genepix files using both marray and limma functions
limma marray limma marray
updated 19.7 years ago by 50k • written 19.7 years ago by ▴ 60
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0
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724
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Flagging spots (was: Bioconductor documentation
Normalization limma marray Normalization limma marray
19.7 years ago Gordon Smyth 50k
0
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2
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1.0k
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merge SMD data from different print batch
Microarray limma marray Microarray limma marray
updated 18.1 years ago by ▴ 60 • written 18.1 years ago by ★ 1.8k
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1
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739
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Loading gal files with marray
marray marray
updated 19.6 years ago by ▴ 10 • written 19.6 years ago by ▴ 10
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3
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1.4k
views
tweaks for the heatmap ()?
Clustering marray Clustering marray
updated 16.5 years ago by ▴ 510 • written 16.5 years ago by ▴ 270
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0
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682
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Advice on print-tip normalization
probe marray oligo probe marray oligo
19.6 years ago Gene Cutler ▴ 50
0
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9
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1.6k
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RE: Advice on print-tip normalization
Cancer probe marray oligo Cancer probe marray oligo
updated 19.6 years ago by ▴ 50 • written 19.6 years ago by ▴ 70
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2
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932
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marrayLayout difficulties
PROcess marray PROcess marray
updated 19.6 years ago by ▴ 920 • written 19.6 years ago by ▴ 80
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1
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1.1k
views
marray bug?
marray marray
updated 19.5 years ago by ▴ 920 • written 19.5 years ago by ▴ 30
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2
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1.3k
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gregmisc package-problems with BioC latest release?
Biobase annotate edd genefilter geneplotter ROC limma siggenes affyPLM marray Biobase
updated 19.5 years ago by ★ 7.4k • written 19.5 years ago by ▴ 130
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3
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1.2k
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Install of 1.5 Packages fails
GO edd genefilter annaffy affyPLM marray GO edd genefilter annaffy affyPLM marray
updated 19.5 years ago by ★ 5.5k • written 19.5 years ago by ★ 1.7k
0
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1
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2.7k
views
error in Loess normalization
Normalization limma marray Normalization limma marray
updated 19.5 years ago by ▴ 920 • written 19.5 years ago by ▴ 50
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0
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596
views
function log.na() removed from package vsn >= 1.5.1
vsn marray vsn marray
19.5 years ago Wolfgang Huber ★ 13k
0
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2
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1.6k
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RE:proper pooling design
Microarray Normalization affy makecdfenv limma marray Microarray Normalization affy limma
updated 20.3 years ago by ▴ 140 • written 20.3 years ago by ▴ 70
50 results • Page 1 of 1
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Comment: Methylation Analysis experiment design using Limma by hortense96 • 0
Thank you very much for your reply and your suggestion, as I'm having a bit of trouble finding information on how to manage this part of th…
Comment: Limma design with continuous and categorical covariates by hortense96 • 0
Hello, I'm trying to do a differential methylation analysis with the Limma package and was wondering if you had any suggestions on how to …
Answer: minfi::read.metharray.exp by Basti ▴ 770
Could you show `list.files("~/Users/clarachretienneau/Desktop/clock epigenetic/PJ1209132_ScanData")` ? There may be a problem related to th…
Comment: DESeq2 - dispersion estimation when there is none by WardDeb • 0
Thank you for the pointers, I'll revert back again to the method section of the paper. As for the negative relationship of the estimated di…
Comment: Error for AnnotationForge makeOrgPackageFromNCBI function by Gayatri • 0
Hello James, How to generate the db? By running the makeOrgPackageFromNCBI() command? I have tried doing that, first by just deleting the …
Votes
Answer: OrgDb for maize
Answer: DESeq2 - dispersion estimation when there is none
Comment: Cannabis and KEGGgraph
Comment: Cannabis and KEGGgraph
Answer: Cannabis and KEGGgraph
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