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masigpro
•
reset
4
votes
5
replies
2.2k
views
MasigPro and estimation of theta for negative binomial law
R
masigpro
edgr
rnaseq
negative binomial model
6.2 years ago
nicolas.hipp
▴ 20
3
votes
7
replies
5.7k
views
Limma PlotMDS: what values should be used?
limma
edger
plotmds
tmm
masigpro
6.3 years ago
dacaba.92
▴ 10
1
vote
0
replies
483
views
Normalization RNA-seq data maSigPro
maSigPro
20 months ago
W.a.m.dekker
▴ 10
1
vote
3
replies
1.2k
views
masigpro: could not find function "negative.binomial"
masigpro
5.4 years ago
nicolas.descostes
▴ 20
1
vote
1
reply
901
views
Are significant genes ordered in maSigPro?
masigpro
rnaseq
updated 6.9 years ago by
James W. MacDonald
65k • written 6.9 years ago by
itspilipineiro
• 0
0
votes
3
replies
1.3k
views
maSigPro and EMV no longer available for windows.
maSigPro
maSigPro
updated 14.9 years ago by
Ana Conesa
▴ 340 • written 14.9 years ago by
Giulio Di Giovanni
▴ 540
0
votes
2
replies
1.3k
views
question about p-values in maSigPro
affy
maSigPro
affy
maSigPro
14.8 years ago
Dick Beyer
★ 1.4k
0
votes
1
reply
1.3k
views
maSigPro error in getting a design matrix
maSigPro
a4
maSigPro
a4
14.5 years ago
lohith madireddy
▴ 40
0
votes
0
replies
1.2k
views
maSigPro - NA values for coefficient estimates - Is a polynomical fit recommended for my data?
limma
maSigPro
a4
limma
maSigPro
a4
14.5 years ago
jeremy wilson
▴ 150
0
votes
1
reply
1.3k
views
Fwd: maSigPro - NA values for coefficient estimates - Is a polynomical fit recommended for my data?
Annotation
limma
maSigPro
a4
Annotation
limma
maSigPro
a4
updated 14.4 years ago by
jeremy wilson
▴ 150 • written 14.4 years ago by
Ana Conesa
▴ 340
0
votes
3
replies
1.4k
views
[maSigPro] How to analyze 2-colour microarrays?
Normalization
limma
maSigPro
Normalization
limma
maSigPro
updated 14.0 years ago by
Mª José Nueda
▴ 90 • written 14.0 years ago by
boczniak767
▴ 720
0
votes
1
reply
1.7k
views
[maSigPro] Error in T.fit - NAs introduced by coercion
maSigPro
maSigPro
updated 14.0 years ago by
Mª José Nueda
▴ 90 • written 14.0 years ago by
boczniak767
▴ 720
0
votes
1
reply
1.6k
views
Design matrix for time course analysis with maSigPro
GLAD
maSigPro
GLAD
maSigPro
updated 13.9 years ago by
Wolfgang Huber
★ 13k • written 13.9 years ago by
Matthias Boeck
▴ 10
0
votes
1
reply
1.2k
views
clustering of microarray time-series data
Microarray
Clustering
limma
maSigPro
Microarray
Clustering
limma
maSigPro
updated 13.5 years ago by
avehna
▴ 240 • written 13.5 years ago by
boczniak767
▴ 720
0
votes
3
replies
1.3k
views
[maSigPro] T.fit - Error in rownames(coefficients)
maSigPro
maSigPro
updated 13.4 years ago by
Mª José Nueda
▴ 90 • written 13.4 years ago by
boczniak767
▴ 720
0
votes
1
reply
1.2k
views
Paired Data in maSigPro
maSigPro
maSigPro
13.4 years ago • updated 13.3 years ago
Mike Walter
▴ 230
0
votes
0
replies
1.2k
views
[maSigPro] Splitting data - how?
maSigPro
maSigPro
13.0 years ago
Valerie Obenchain
★ 6.8k
0
votes
0
replies
1.1k
views
maSigPro and "subscript out of bounds"
Normalization
Regression
maSigPro
Normalization
Regression
maSigPro
12.9 years ago
Andrea Grilli
▴ 240
0
votes
1
reply
1.8k
views
maSigPro and "subscript out of bounds"
Normalization
Regression
maSigPro
Normalization
Regression
maSigPro
updated 12.9 years ago by
Andrea Grilli
▴ 240 • written 12.9 years ago by
Valerie Obenchain
★ 6.8k
0
votes
3
replies
1.3k
views
maSigPro and "vars" argument
maSigPro
maSigPro
updated 12.6 years ago by
Mª José Nueda
▴ 90 • written 12.6 years ago by
Andrea Grilli
▴ 240
0
votes
6
replies
1.7k
views
[maSigPro] two color array analysis of time series in different cell lines.???
limma
maSigPro
limma
maSigPro
updated 5.6 years ago by
sbbinfo90
• 0 • written 10.5 years ago by
neeraj rana
▴ 60
0
votes
1
reply
966
views
maSigPro dataset information
maSigPro
maSigPro
10.5 years ago
Guest User
★ 13k
0
votes
1
reply
3.3k
views
maSigPro help- p. vector error
RNASeq
maSigPro
a4
RNASeq
maSigPro
a4
updated 8.5 years ago by
Mª José Nueda
▴ 90 • written 10.2 years ago by
Guest User
★ 13k
0
votes
5
replies
5.7k
views
masigpro Error in terms.formula(formula, data = data) : '.' in formula and no 'data' argument
masigpro
updated 8 months ago by
Tatsuya
• 0 • written 8.9 years ago by
john
▴ 120
0
votes
1
reply
1.6k
views
Microarray time-course clustering, using "hclust" in masigPro
clustering
hclust
maSigPro
updated 8.2 years ago by
efejiroe
• 0 • written 8.7 years ago by
dimitri.leonid.lindenwald
▴ 50
0
votes
2
replies
1.2k
views
row with zeros
maSigPro
min.obs
p.vector
updated 8.5 years ago by
Mª José Nueda
▴ 90 • written 8.6 years ago by
gmdc
• 0
0
votes
1
reply
1.1k
views
Paralelization of maSigPro
maSigPro
parallel
8.6 years ago
gmdc
• 0
0
votes
0
replies
1.0k
views
MaSigPro - pre-filtering of genes
MaSigPro
8.2 years ago
GFM
▴ 20
0
votes
1
reply
1.3k
views
maSigPro edesign and error message
masigpro
8.1 years ago
simonjean434
▴ 10
0
votes
2
replies
2.0k
views
maSigPro genes from clusters
masigpro
clustering
updated 7.8 years ago by
Mª José Nueda
▴ 90 • written 7.8 years ago by
ls299
• 0
0
votes
0
replies
794
views
maSigPro groups comparisons
masigpro
7.8 years ago
ls299
• 0
0
votes
0
replies
969
views
Block design for maSigPro
masigpro
timecourse
7.7 years ago
sanj
▴ 20
0
votes
1
reply
1.4k
views
maSigPro: error using see.genes()
masigpro
updated 6.1 years ago by
therealsisterdot
• 0 • written 7.0 years ago by
valentine.murigneux
• 0
0
votes
0
replies
6.3k
views
maSigPro error PlotGroups [Error: (list) object cannot be coerced to type 'double']
masigpro
error
PlotGroups
6.9 years ago
nicolas.descostes
▴ 20
0
votes
0
replies
917
views
Iso-maSigPro errors in IsoModel and PodiumChange
masigpro
6.6 years ago
xin.zhou
• 0
0
votes
0
replies
929
views
How to specify covariates in maSigPro analysis (like limma)
masigpro
covariates
limma
differential expression
time-course
6.6 years ago
veersingh.marwah
• 0
0
votes
0
replies
1.1k
views
Understanding NextMaSigPro, regression fit and stepwise regression
timecourse
rnaseq
masigpro
6.4 years ago
jelisaveta.jeki.djordjevic
• 0
0
votes
1
reply
1.3k
views
glm.fit problem with maSigPro
software error
maSigPro
Nueda
RNAseq
updated 5.2 years ago by
James W. MacDonald
65k • written 5.2 years ago by
lalamig
• 0
0
votes
3
replies
834
views
MaSigPro Single Series Analysis
maSigPro
updated 13 months ago by
guang-hui
• 0 • written 4.1 years ago by
dorothy.mitchell
• 0
0
votes
2
replies
1.3k
views
maSigPro see.genes function gives "invalid 'times' argument" error for single time course data
masigpro
3.9 years ago • updated 3.3 years ago
daw277
• 0
0
votes
2
replies
819
views
maSigPro Influential genes, step.methods and gene removal
maSigPro
TimeCourse
updated 3.8 years ago by
Michael Love
41k • written 3.8 years ago by
DcL-A
• 0
0
votes
2
replies
781
views
maSigPro: PlotGroups function only plots one out of six time points
maSigPro
PlotGroups
updated 3 months ago by
QINYAN
• 0 • written 3.7 years ago by
Olof.rundquist
• 0
0
votes
1
reply
945
views
maSigPro see.genes expression profile graphs. Change color and label text size
maSigPro
graph
updated 3.4 years ago by
Mª José Nueda
▴ 90 • written 3.4 years ago by
Itzel
• 0
0
votes
0
replies
412
views
maSigPro visualizing individually each plot from each cluster
plot
maSigPro
Clustering
19 months ago
oseias.rf.junior
• 0
0
votes
1
reply
802
views
t.fit stops in masigpro while running RNA seq data
RNASeqData
maSigPro
3.0 years ago
subashika
• 0
0
votes
0
replies
259
views
maSigPro drug concentration
maSigPro
7 months ago
jiawen
• 0
0
votes
1
reply
1.6k
views
RNASeq time-course analysis with maSigPro: T.fit error when assessing multiple groups
rnaseq
masigpro
timecourse
9.0 years ago
Ryan Goosen
• 0
0
votes
1
reply
381
views
T.fit function of maSigPro returns error message
maSigPro
7 months ago
hanna.g
• 0
0
votes
0
replies
1.1k
views
microarray analysis of a dose response * strain experiment
Microarray
affy
limma
maSigPro
DOSE
BRAIN
Microarray
affy
limma
maSigPro
DOSE
BRAIN
17.5 years ago
Naomi Altman
★ 6.0k
0
votes
2
replies
1.1k
views
Time course cDNA two color array analysis
TimeCourse
limma
timecourse
maSigPro
TimeCourse
limma
timecourse
maSigPro
17.3 years ago • updated 17.2 years ago
Marcelo Laia
▴ 450
50 results • Page
1 of 1
Recent ...
Replies
Comment: DESeq filtering specific to contrasts
by
Michael Love
41k
It will likely not filter it out, but really the per-dataset details would affect the results.
Comment: DESeq filtering specific to contrasts
by
Carlin95
• 0
Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…
Comment: FilterByExpr low counts with small sample size
by
Jonathan
▴ 10
Thank you for your answer; However, I have some follow-up questions. Following up in In your [1-2-3 article][1], you say that > "... the…
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
by
Seyram M.
• 0
Thank you very much for your reply! I will do so. Kind regards, Seyram
Comment: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
by
isaac.vock
• 0
Thank you for your response. I can confirm that setting `-t exon` and/or removing `-s 1` and adding `-O` has no impact on the number of suc…
Votes
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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