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massspectrometry
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Job:
Open position in the CBIO lab: single-cell proteomics
Proteomics
SingleCell
JobPosting
MassSpectrometry
21 months ago
Laurent Gatto
1.6k
0
votes
0
replies
889
views
Job:
Open position in the CBIO lab: spatial proteomics and PTMs
pRoloc
proteomics
Spatial
Proteomics
MassSpectrometry
21 months ago
Laurent Gatto
1.6k
0
votes
0
replies
710
views
News:
Course - R/BIOCONDUCTOR FOR MASS SPECTROMETRY AND PROTEOMICS
Proteomics
R
Bioconductor
MassSpectrometry
21 months ago
info
▴ 10
0
votes
1
reply
1.1k
views
Analyse of MASS spectrometry proteomics data
DifferentialExpression
MassSpectrometry
updated 21 months ago by
afikolami
• 0 • written 2.3 years ago by
sfall.isup
• 0
0
votes
4
replies
1.5k
views
How to analyse RNA-based protein pulldown mass spectrometry data
Proteomics
limma
MassSpectrometry
updated 20 months ago by
Gordon Smyth
52k • written 3.5 years ago by
barrypraveen
• 0
1
vote
2
replies
1.5k
views
calculate theoretical isotope distribution give the AA sequence
Metabolomics
proteomics
MassSpectrometry
4.0 years ago
Oliver
• 0
0
votes
3
replies
1.3k
views
Why I can not install rTANDEM?
MassSpectrometry
Proteomics
mzR
4.0 years ago
Gilad
• 0
2
votes
2
replies
4.3k
views
Thermo Xcalibur RAW data to MGF
mass spectrometry
massspectrometry
updated 6.6 years ago by
Laurent Gatto
1.6k • written 6.6 years ago by
hwu12
▴ 10
0
votes
1
reply
1.7k
views
Metabolite identification package
xcms
massspectrometry
metabolomics
updated 6.6 years ago by
Johannes Rainer
★ 2.1k • written 6.6 years ago by
johnhamre3
• 0
0
votes
4
replies
1.8k
views
Cannot install and load MSstats package
proteomics
massspectrometry
msstats
updated 6.7 years ago by
Laurent Gatto
1.6k • written 6.7 years ago by
zz298
• 0
2
votes
3
replies
2.5k
views
Imputation method selection (mass spectrometry) bimodal distribution
impute
missing value imputation
DEP
massspectrometry
updated 7.0 years ago by
Laurent Gatto
1.6k • written 7.0 years ago by
serpalma.v
▴ 60
1
vote
3
replies
2.7k
views
XCMS2 on MSMS data
xcms
metabolomics
massspectrometry
lipidomics
bioconductor
8.9 years ago
Titan
• 0
0
votes
3
replies
2.3k
views
Problem with XCMS
xcms
metabolomics
lipidomics
proteomics
massspectrometry
8.9 years ago
Titan
• 0
0
votes
0
replies
1.7k
views
News:
4 days left to register for a short course on computational proteomics
proteomics
news
course
massspectrometry
News
9.8 years ago
Olga Vitek
▴ 40
0
votes
0
replies
1.5k
views
Job:
Research Data Technician, Cambridge, UK
proteomics
massspectrometry
Job
9.9 years ago
Laurent Gatto
1.6k
25
votes
9
replies
7.5k
views
voom for spectral counts
limma
voom
proteomics
spectral counts
massspectrometry
updated 9.9 years ago by
Gordon Smyth
52k • written 9.9 years ago by
Ben Neely
▴ 40
2
votes
1
reply
1.9k
views
News:
Announcing a short course in computational and statistical proteomics
proteomics
massspectrometry
R
News
9.9 years ago
vitek.olga
▴ 20
0
votes
1
reply
1.5k
views
A package to analyse Quantitative proteomics study
massspectrometry
updated 10.1 years ago by
Laurent Gatto
1.6k • written 10.1 years ago by
Roopa Subbaiaih
▴ 130
1
vote
2
replies
2.5k
views
Problem with openMSfile in mzR
massspectrometry
10.1 years ago
meilan23
• 0
0
votes
1
reply
1.8k
views
Mass Spectrometry data analysis
MassSpectrometry
PRIDE
updated 10.1 years ago by
Laurent Gatto
1.6k • written 10.1 years ago by
paulamirini2008
• 0
20 results • Page
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Comment: Feature Counts - potential bug with outfile.jcounts
by
chris2.a.white
• 0
Hi @yangliao, thanks for the note. We use Feature Counts extensively for gene-level counting (exon features). Unfortunately though, and I…
Comment: Feature Counts - potential bug with outfile.jcounts
by
Yang Liao
▴ 450
When you use `featureCounts` to count junctions with the `-J` option, it doesn't check if the junction is exactly overlap with exons of gen…
Comment: DESeq2: Gene is DEG in one experiment but not in the other depite similar baseMe
by
ATpoint
★ 4.6k
I think you run into the common pitfall that you treat results as categorical (significant, not significant) whereas in reality the results…
Comment: DESeq2: Gene is DEG in one experiment but not in the other depite similar baseMe
by
swbarnes2
★ 1.4k
It would probably help if you broke out the raw and normalized read counts for all the samples.
Comment: RSubread output significantly different from bash Subread output
by
Aimee
• 0
Hi Gordon, Thank you so much for this response. I went back and checked, and you are absolutely correct that it was shown in the settings b…
Votes
Answer: RSubread output significantly different from bash Subread output
Answer: RSubread output significantly different from bash Subread output
Answer: RSubread output significantly different from bash Subread output
Comment: What type of counts data to import for performing Isoform analysis in edgeR
Answer: Running multiple KNN queries in parallel
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