Showing : mast • reset
0
votes
8
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2.4k
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MAST - not getting Hurdle p values
MAST
updated 7.1 years ago by ▴ 270 • written 7.1 years ago by ▴ 10
2
votes
7
replies
2.2k
views
Estimation of non-trivial contrasts in MAST
mast
updated 6.1 years ago by ▴ 270 • written 6.1 years ago by ▴ 90
1
vote
7
replies
2.1k
views
Likelihood ratio test (lrTest) in MAST comparing full to reduced model; and another question on controlling for CDR
MAST
2.1 years ago • updated 2.0 years ago Ken C • 0
0
votes
6
replies
1.9k
views
Error in zlm function model matrix
MAST
6.9 years ago jka8119 ▴ 10
2
votes
4
replies
2.4k
views
Interpretation of cngeneson when doing differential expression analysis in MAST
mast differential gene expression
updated 6.9 years ago by ▴ 270 • written 6.9 years ago by ▴ 40
0
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4
replies
1.7k
views
MAST: What does the function gseaAfterBoot do exactly?
MAST
7.0 years ago dfm2129 • 0
2
votes
3
replies
1.6k
views
Logistic regression in MAST - question
mast
updated 6.0 years ago by ▴ 270 • written 6.0 years ago by ▴ 90
3
votes
3
replies
3.2k
views
How do you test a contrast in MAST?
MAST single-cell differential gene expression
updated 7.5 years ago by ▴ 270 • written 7.5 years ago by ▴ 40
1
vote
3
replies
1.7k
views
comparing 2 models with confounders with MAST (scRNA-seq DEA)
scRNA-seq MAST confounders
updated 5.2 years ago by ▴ 270 • written 5.2 years ago by ▴ 10
4
votes
3
replies
2.5k
views
single-cells RNA-seq analysis by MAST with unbalanced group size
mast single-cell rna-seq differential analysis
updated 7.2 years ago by ▴ 270 • written 7.2 years ago by ▴ 100
2
votes
3
replies
2.5k
views
Using MAST with DropSeq data
MAST mast dropseq
updated 7.1 years ago by ▴ 270 • written 7.1 years ago by ▴ 10
3
votes
3
replies
1.1k
views
Robust way of dealing with low number of samples for Differential Gene Expression
limma edgeR DESeq2 MAST
written 5 months ago by • 0
0
votes
3
replies
1.9k
views
Modeling Dose-response data in MAST
MAST sc-rnaseq scrnaseq
updated 7.7 years ago by ▴ 270 • written 7.7 years ago by • 0
0
votes
3
replies
1.9k
views
MAST invalid Hypothesis, class objectORconnection error
R MAST scRNASeq
4.6 years ago TriS ▴ 200
0
votes
2
replies
1.7k
views
What is the most useful distance measure to use for cell clustering based on MAST deviance residuals?
MAST
7.5 years ago alexanderaivazidis • 0
0
votes
2
replies
1.5k
views
MAST compare two conditions with several donors
MAST
updated 4.1 years ago by • 0 • written 4.4 years ago by • 0
0
votes
2
replies
1.5k
views
Warning in bayes fit in MAST GSEA
MAST GSEA bayesglm.fit
6.6 years ago santos22903 • 0
3
votes
2
replies
2.8k
views
MAST reported warning "Coefficients ... are never estimible and will be dropped."
mast sc-rnaseq
8.0 years ago shao ▴ 100
2
votes
2
replies
2.5k
views
Input for MAST
MAST
2.1 years ago zuljiamel1991 ▴ 10
1
vote
2
replies
836
views
Extracting genomic sequences using agat and bedtools yields different results
MAST
updated 12 months ago by ★ 4.8k • written 12 months ago by • 0
2
votes
1
reply
3.1k
views
MAST: testing differential expression with a nested factorial design
MAST single-cell rna-seq
updated 6.9 years ago by ▴ 270 • written 7.0 years ago by ▴ 20
0
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1
reply
1.6k
views
Removal of batch effects before non-linear clustering for scRNAseq
scrnaseq MAST
7.9 years ago Andrew_McDavid ▴ 270
2
votes
1
reply
5.0k
views
Intepretation of Z scores for gene set enrichment analysis in MAST
MAST scRNA GSEA
updated 7.7 years ago by ▴ 270 • written 7.7 years ago by • 0
4
votes
1
reply
2.2k
views
NAs in continuous coefficient and fold change in `zlm`
scrnaseq MAST differential gene expression
7.6 years ago Andrew_McDavid ▴ 270
2
votes
1
reply
1.3k
views
How to load data csv in MAST
mast
6.9 years ago francesco.brundu@gmail.com ▴ 40
0
votes
1
reply
1.4k
views
How can I compute AIC for MAST hurdle model fitted in the whole dataset?
MAST AIC calcuation Parameters single cell hurdle model
updated 12 months ago by ▴ 30 • written 6.1 years ago by • 0
0
votes
1
reply
2.3k
views
Minimum number of cells required for the MAST
MAST scRNAseq differential expression
5.6 years ago Andrew_McDavid ▴ 270
0
votes
1
reply
1.8k
views
About getting DE genes using MAST
MAST
updated 5.3 years ago by ▴ 270 • written 5.3 years ago by • 0
0
votes
1
reply
1.6k
views
How to do pairwise multiple comparisons in MAST
MAST
updated 8 months ago by • 0 • written 4.1 years ago by • 0
0
votes
1
reply
1.2k
views
MAST zlm shows warning: Coefficients ... are never estimible and will be dropped.
MAST
updated 3.8 years ago by • 0 • written 4.1 years ago by • 0
0
votes
1
reply
756
views
Mismatch between MAST DE results and expression dot plot
MAST mastR
14 months ago Simon • 0
0
votes
1
reply
1.4k
views
Low logFCs using MAST for scRNA-seq
MAST
updated 7 months ago by ▴ 70 • written 3.0 years ago by • 0
0
votes
1
reply
541
views
Which input data is acceptable for MAST?
SCTransform MAST
updated 5 months ago by ▴ 270 • written 5 months ago by • 0
0
votes
1
reply
1.3k
views
Differentially expressed genes across three different conditions
MAST SingleCell diffGeneAnalysis
updated 3.7 years ago by 68k • written 3.7 years ago by • 0
0
votes
0
replies
795
views
Error: grouping factors must have > 1 sampled level
Mast mastR MAST
updated 12 months ago by 68k • written 12 months ago by • 0
0
votes
0
replies
359
views
MAST package: Most appropriate way to perform lrTest for effect of factor with multiple levels in pairwise manner?
MAST
8 months ago Kelly • 0
0
votes
0
replies
665
views
MAST for single cell ATAC data
MAST
2.1 years ago zuljiamel1991 ▴ 10
0
votes
0
replies
399
views
Comparing the effects of a condition over time in two seperate tissues
MAST
13 months ago Dillon • 0
0
votes
0
replies
920
views
Differential expression with single cell data: any good two component (hurdle) models recently?
SingleCellWorkflow DifferentialExpression SingleCell SingleCellMultiModal MAST
2.8 years ago Nik Tuzov ▴ 90
1
vote
0
replies
861
views
When I run `zlm` with several clusters, how to compare 1 cluster versus all the others?
MAST
3.6 years ago Dan • 0
0
votes
0
replies
1.1k
views
Issues geting meaninfull results for single cell DGE using MAST
MAST SingleCell
3.2 years ago zroger499 • 0
0
votes
0
replies
743
views
How does MAST caculate log fc
MAST
2.6 years ago Chenghao • 0
0
votes
0
replies
384
views
Z-score Interpretation across components
MAST
6 months ago GJ • 0
0
votes
0
replies
1.5k
views
How to interpret MAST coefficients
DifferentialExpression MAST
2.5 years ago Ismail • 0
0
votes
0
replies
1.1k
views
Performing DGE analysis with MAST on a variable with more than 2 levels
MAST DEG SingleCell
2.9 years ago zroger499 • 0
0
votes
0
replies
571
views
Linear Mixed Model for Differential Gene Expression in Single-Cell RNAseq with Batch Effects
lmer MAST DifferentialExpression
8 months ago nhaus ▴ 70
0
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0
replies
1.1k
views
DEG among experimental and control group in MAST
MAST DEG batch effects
5.5 years ago chendianyu • 0
0
votes
0
replies
797
views
How to extract P-Values and LogFC from lrTest in MAST?
pvalue logFC lrtest MAST
23 months ago Tadeoye ▴ 20
0
votes
0
replies
161
views
Confidence interval contains 0 but p<0.05
MAST
3 months ago Adelyn • 0
49 results • Page 1 of 1
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