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mclust
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intra-cluster silhouette width
mclust
silhouette
fcp
6.1 years ago
Seymoo
• 0
0
votes
0
replies
1.3k
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no method for coercing this S4 class to a vector
mclust
s4vectors
S4
as.matrix
.FCS
7.7 years ago
anara92
• 0
0
votes
0
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1.1k
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Running Mclust package in R, using maximum a posteriori (MAP)
r
mclust
clustering
7.8 years ago
mabdulsa
• 0
0
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3
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2.2k
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Prior Control with Mclust package
R
mclust
clustering
updated 7.8 years ago by
Aedin Culhane
▴ 510 • written 7.8 years ago by
mabdulsa
• 0
2
votes
4
replies
4.3k
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Error and questions about clustering & ploting functions in r packages cluster and mclust regarding kmeans method
cluster
mclust
limma
clusplot
kmeans
8.7 years ago
svlachavas
▴ 830
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Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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Gordon Smyth
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It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
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This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
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by
James W. MacDonald
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It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Comment: DEG Filtering
by
Gordon Smyth
50k
I already know that you using CEL files because you need them to perform RMA normalization. Yes, you should follow the advice I have alread…
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DESeq2 normalization vs VST vs rlog
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Answer: error in ChAMP loading file
Circumvent creating .ff files in the working directory when using genotype.Illumina() function
Answer: Problem with maplot {affy} method when using rma {affy} method output as its inp
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