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mclust
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Error and questions about clustering & ploting functions in r packages cluster and mclust regarding kmeans method
cluster
mclust
limma
clusplot
kmeans
8.7 years ago
svlachavas
▴ 830
0
votes
3
replies
2.3k
views
Prior Control with Mclust package
R
mclust
clustering
updated 7.9 years ago by
Aedin Culhane
▴ 510 • written 7.9 years ago by
mabdulsa
• 0
0
votes
0
replies
1.3k
views
no method for coercing this S4 class to a vector
mclust
s4vectors
S4
as.matrix
.FCS
7.8 years ago
anara92
• 0
0
votes
0
replies
1.3k
views
intra-cluster silhouette width
mclust
silhouette
fcp
6.1 years ago
Seymoo
• 0
0
votes
0
replies
1.2k
views
Running Mclust package in R, using maximum a posteriori (MAP)
r
mclust
clustering
7.9 years ago
mabdulsa
• 0
5 results • Page
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Answer: DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR)
by
Michael Love
41k
> I got many p values that had "1.000000e+00" and padj "1" and stat of "0" when I added the Log threshold of LFC >1 and LFC < -1...is this …
Comment: Trying to use enrichGO
by
fernanda.backsouza
▴ 10
With all my love, thank you Guido, GOxploreR beeing a big ally for me. I don't know how to be grateful right now.
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.
Answer: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
swbarnes2
★ 1.3k
Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…
Comment: get BM error
by
James W. MacDonald
65k
I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…
Votes
C: when to apply quantile normalization with voom in limma/voom framework with RNA-
A: How to know if I should use voomWithQualityWeights() or not?
A: Weird results (ribosomal proteins / Y-linked genes) in limma/voom
Answer: Log-cpm values from limma
Answer: Log-cpm values from limma
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