Biostar Mdsplot

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MDSplot geneexpression insilicomerging

updated 6.9 years ago by James W. MacDonald 62k • written 6.9 years ago by Shamim Sarhadi ▴ 20

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edgeR plotmds differential gene expression MDS mdsplot

updated 4.1 years ago by Gordon Smyth 47k • written 4.1 years ago by ilovesuperheroes1993 • 0

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Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 39k

The number should be roughly 7000 across the iterations. Can you show table(seqnames(gr)) for the original and for one iteration of the b…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

Thank you for your help Dr. Michael. One more doubt, my original loci contains 7000 locus on different chromosomes. When i am generating …

Comment: Strand information in a GAlignmentsList object derived from strand-specific pair by Robert Castelo ★ 3.0k

As James said, a `GAlignmentsList` object is the container for storing properly-paired, but with ambiguous pairing, alignments, and we're i…

Answer: Doubts about manipulation and annotation of microarray files deposited at GEO by James W. MacDonald 62k

Your first question is something that you will have to answer for yourself. There are any number of reasons that an array manufacturer will…

Comment: Splicing analysis with ASpli package gives an error when I use binGenome functio by Sophie • 0

I was having a similar problem using the hg19 genome from UCSC. I tried many different ways of accessing the gtf and txdb object (i.e. down…

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A: Calculate S/N ratios from apeglm for GSEA

Calculate S/N ratios from apeglm for GSEA

Convert SpatialExperiment Object to Seurat Object

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