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2.9k
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How can I create a mean ROC curve for multiple plotted ROC curves, R
R
ROC
mean
plot
multiple roc curves
updated 5.6 years ago by
chris86
▴ 420 • written 5.6 years ago by
sap940
• 0
0
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1
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1.2k
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mean and SD in output of Limma for differential-gene-expression
limma
mean
sd
updated 6.1 years ago by
Aaron Lun
★ 28k • written 6.1 years ago by
mheydarpour
▴ 10
0
votes
1
reply
755
views
How to take mean from specific column
Mean
R
updated 6.5 years ago by
Gordon Smyth
50k • written 6.5 years ago by
kritikamish99
▴ 10
5
votes
5
replies
1.8k
views
DESeq2 incorrect basemean
deseq2
mean
updated 7.1 years ago by
Michael Love
41k • written 7.1 years ago by
asd
• 0
0
votes
1
reply
1.6k
views
Efficient coverage calculation with RleList and GRanges
granges
Rle
coverage
View
mean
updated 7.8 years ago by
Michael Lawrence
★ 11k • written 7.8 years ago by
Christian Ruckert
▴ 170
1
vote
1
reply
827
views
mean and standard deviation at each point value of a list of matrices
mean
standard deviation
updated 8.5 years ago by
James W. MacDonald
65k • written 8.5 years ago by
vinod.acear
▴ 50
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Comment: Reproducibility issue with scran together with lapply and BiocParallel
by
ATpoint
★ 4.0k
Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
winwater0928
• 0
Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…
Answer: Reproducibility issue with scran together with lapply and BiocParallel
by
Aaron Lun
★ 28k
IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…
Comment: DESeq2 output used for PCA plot on R studio
by
Aaliya
• 0
I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…
Votes
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
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