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meme
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746
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Plotting motif enrichment vs background - Jaspar core vertebrates
pwm
motifs
jaspar
meme
motif analysis
5.3 years ago
rbronste
▴ 60
1
vote
2
replies
1.1k
views
Split AME .tsv file into GRanges object or DataFrame
meme
ame
motif
dataframe
granges
updated 5.4 years ago by
Michael Lawrence
★ 11k • written 5.4 years ago by
rbronste
▴ 60
0
votes
0
replies
662
views
Trying to load several MEME formatted motifs for use in motifStack
motifstack
meme
6.0 years ago
aramp10
• 0
1
vote
2
replies
1.1k
views
motifStack importMatrix problem reading meme file to pcm
motifstack
meme
updated 6.0 years ago by
Ou, Jianhong
★ 1.3k • written 6.0 years ago by
lmolla
▴ 10
0
votes
0
replies
1.3k
views
Import motifs in .meme format in MotifDB
motfdb
pwmenrich
meme
8.0 years ago
enricoferrero
▴ 660
0
votes
0
replies
1.3k
views
Repetitive motifs on Illumina 450k derived sequences
illumina
450k
motifs
meme
8.2 years ago
Gustavo Fernández Bayón
▴ 440
2
votes
1
reply
3.7k
views
Please suggest any good motif Discovery tool in R-Bioconductor.
motif
motifdb
meme
updated 8.3 years ago by
Hervé Pagès
16k • written 8.3 years ago by
vinod.acear
▴ 50
7 results • Page
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Answer: maftools: Error in validateMaf(maf = maf, isTCGA = isTCGA, rdup = removeDuplicat
by
snijesh
▴ 20
You can try: using `read.delim` or `fread`. ``` my_maf = data.table::fread("path/to/maf/sample.maf") my_maf = read.maf(maf = my_maf) …
Comment: DEG Filtering
by
Amit
• 0
Hi Gordon, Thank you for your response and advice. I want to analyze Dataset GSE18090 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi) whic…
Comment: edgeR, 3 x 2 design with a batch effect and contrasts
by
Gordon Smyth
50k
Yes, that is a quote from [A guide to creating design matrices for gene expression experiments](https://bioconductor.org/packages/release/w…
Comment: edgeR, 3 x 2 design with a batch effect and contrasts
by
JKim
• 0
Thank you. I think I found why the order matters. > Although an intercept-free design matrix has been coded using the 0+ notation, the in…
Comment: Unable to annotate ExpressionSet object from hugene11st chip
by
Efra
• 0
I did as you told, and after running ```eset.annot <- annotateEset(eset, hugene11sttranscriptcluster.db)``` I got the next output: ``` 'se…
Votes
C: How to check that the reads in two fastq files are in the same order
Answer: edgeR, 3 x 2 design with a batch effect and contrasts
Answer: Need help with creating and plotting temporal clustering analysis of DEGs
Answer: Problem converting msigdb Human symbols to Zebrafish in gmt format
Answer: Problem converting msigdb Human symbols to Zebrafish in gmt format
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