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meme
•
reset
0
votes
0
replies
617
views
Plotting motif enrichment vs background - Jaspar core vertebrates
pwm
motifs
jaspar
meme
motif analysis
4.8 years ago
rbronste
▴ 60
1
vote
2
replies
998
views
Split AME .tsv file into GRanges object or DataFrame
meme
ame
motif
dataframe
granges
updated 4.9 years ago by
Michael Lawrence
11k • written 4.9 years ago by
rbronste
▴ 60
0
votes
0
replies
571
views
Trying to load several MEME formatted motifs for use in motifStack
motifstack
meme
5.6 years ago
aramp10
• 0
1
vote
2
replies
919
views
motifStack importMatrix problem reading meme file to pcm
motifstack
meme
updated 5.6 years ago by
Ou, Jianhong
★ 1.3k • written 5.6 years ago by
lmolla
▴ 10
0
votes
0
replies
1.1k
views
Import motifs in .meme format in MotifDB
motfdb
pwmenrich
meme
7.6 years ago
enricoferrero
▴ 660
0
votes
0
replies
1.2k
views
Repetitive motifs on Illumina 450k derived sequences
illumina
450k
motifs
meme
7.7 years ago
Gustavo Fernández Bayón
▴ 440
2
votes
1
reply
3.3k
views
Please suggest any good motif Discovery tool in R-Bioconductor.
motif
motifdb
meme
updated 7.9 years ago by
Hervé Pagès
16k • written 7.9 years ago by
vinod.acear
▴ 50
7 results • Page
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Comment: Exporting DESeq2 filtered results
by
James W. MacDonald
63k
I am interested to know what part of my response you found rude. I asked nicely that you don't add to ancient posts, said your post isn't r…
Comment: Speeding up of DelayedArray::write_block()
by
Hervé Pagès
16k
> I can imagine writing a sparse high-dimensional array in HDF5, but I'm still not sure how to implement the part where it is read and imme…
Comment: Speeding up of DelayedArray::write_block()
by
Hervé Pagès
16k
Not in BioC 3.18. At some point (e.g. in 6 months) they will be deprecated, then 6 months later (i.e. in 1 year) they will be defunct, then…
Comment: Biostrings error at retrieving protein sequences
by
Hervé Pagès
16k
Yes, but you need to put the clean names back on the AAStringSet object: ``` names(protein_sequences) <- gsub(" .*", "", names(protein_sequ…
Comment: Exporting DESeq2 filtered results
by
camillab.
▴ 10
thanks! I didn't`t notice that. I will cancel it now!
Votes
Unclear of calculating correlations with case+control samples together
Answer: Error MakeOrgPackagefromNCBI
Batch Effect in DESeq2, how to control, how to remove it, how to address biological question
A: BiomaRt Arabidopsis genome unavailable
Answer: enrichKEGG
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