Showing : memory problem • reset
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split champ.load for large number of samples
memory problem champ.load
5.1 years ago petra.lenzini • 0
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4
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848
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DESeq2 memory allocation question
deseq2 memory problem
updated 5.1 years ago by 41k • written 5.1 years ago by ▴ 60
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2
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800
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How to handle big data sets (>10GB) in Bioconductor packages?
big data methylmix memory problem
updated 5.3 years ago by 25k • written 5.3 years ago by • 0
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741
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ProcessAmplicons using very little memory on big job?
edgeR processamplicons memory problem
5.4 years ago sdalin • 0
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3
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1.5k
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GAIA package Error: cannot allocate vector of size 852.1 Mb
memory problem gaia
updated 6.0 years ago by ▴ 40 • written 6.0 years ago by • 0
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Problem with memory limit in Rstudio/Windows when importing Affymetrix HTA 2.0 CEL files with oligo R package
oligo hta2.0 affymetrix microarrays memory problem
updated 6.7 years ago by 64k • written 6.7 years ago by ▴ 820
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Comment: Correct the batch effect in methylation analysis in R by kyj2226 • 0
Thank you for your response Gordon :) I've already run the code below, just add batch to the limma linear model design <- model.matri…
Answer: Correct the batch effect in methylation analysis in R by Gordon Smyth 49k
You should not apply batch correction functions like harman before a limma analysis. Instead, just add `batch` to the limma linear model. …
Answer: Agilent Microarray Gene Oncology analysis gone wrong by Gordon Smyth 49k
Your use of `coef=1` is incorrect, for reasons explained in the limma User's Guide. If you had simply left `coef` at the default, then thin…
Comment: Normalised counts from RUVg in RUVSeq by Shaimaa Gamal • 0
Hello I was wondering if I should use ruv-corrected counts and ruv lib sizes to create a DGE object that can be used later for DE analysis …
Comment: enrichGOgradient color change by James W. MacDonald 64k
You could look at my answer and extrapolate from there.
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Answer: Correct the batch effect in methylation analysis in R
Answer: enrichGOgradient color change
Answer: Filter genes by expression for voomLmFit
Answer: Filter genes by expression for voomLmFit
Answer: Filter genes by expression for voomLmFit
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