Biostar Memory

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xcms memory findchrompeaks

22 months ago abrsoule ▴ 30

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3

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706

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DEXSeq exon memory dispersions estimateDispersions

2.8 years ago andreismolnikov00 • 0

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9

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memory summarizeOverlaps

updated 4.0 years ago by James W. MacDonald 62k • written 4.0 years ago by Diana ▴ 10

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monocole memory CellDataSet

5.7 years ago Assa Yeroslaviz ★ 1.5k

4 results • Page 1 of 1

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Answer: DEG analysis with Paired-end RNA-seq data using DESeq2, do I need to contain the by swbarnes2 ★ 1.2k

The vignette includes that in the design because the example is a mix of single and paired end reads, and that is added to the design so th…

Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper by Gordon Smyth 47k

`PoolStatus` just indicates whether a sample is a pool or not, i.e., the first option.

Comment: How to map geneIds to ENTREZIDs by stacy.genovese • 0

James - I wish I knew where you lived so I could buy you a beer! Thank you so much for your help. I'm going to work now on converting th…

Answer: How to map geneIds to ENTREZIDs by James W. MacDonald 62k

You are close. But note that the geneIds in your `GRanges` object are NCBI Gene IDs, which used to be called Entrez Gene IDs, and which are…

Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper by k.roelfs • 0

Just so I don't make a mistake, do I just tell voomLmFit if a sample is a pool or a replicate independent of each group, or do I have to sp…

Votes

Comment: Error in .order_seqlevels(chrom_sizes[, "chrom"]) : !anyNA(m32) is not TRUE

Answer: How to map geneIds to ENTREZIDs

Comment: ComplexHeatmap - Default distance and hierarchical clustering methods

Comment: Error in .order_seqlevels(chrom_sizes[, "chrom"]) : !anyNA(m32) is not TRUE

Awards • All

Scholar to James W. MacDonald 62k

Commentator to vs2001 ▴ 30

Scholar to Mike Smith ★ 5.9k