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Showing :
memory
•
reset
0
votes
0
replies
316
views
Running > 100 samples per group - memory issues
xcms
memory
findchrompeaks
22 months ago
abrsoule
▴ 30
1
vote
3
replies
706
views
DEXSeq with large(ish) number of samples
DEXSeq
exon
memory
dispersions
estimateDispersions
2.8 years ago
andreismolnikov00
• 0
1
vote
9
replies
841
views
Memory issues in summarizeOverlaps funtion
memory
summarizeOverlaps
updated 4.0 years ago by
James W. MacDonald
62k • written 4.0 years ago by
Diana
▴ 10
0
votes
0
replies
779
views
'memory not mapped' error when running monocole
monocole
memory
CellDataSet
5.7 years ago
Assa Yeroslaviz
★ 1.5k
4 results • Page
1 of 1
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Replies
Answer: DEG analysis with Paired-end RNA-seq data using DESeq2, do I need to contain the
by
swbarnes2
★ 1.2k
The vignette includes that in the design because the example is a mix of single and paired end reads, and that is added to the design so th…
Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper
by
Gordon Smyth
47k
`PoolStatus` just indicates whether a sample is a pool or not, i.e., the first option.
Comment: How to map geneIds to ENTREZIDs
by
stacy.genovese
• 0
James - I wish I knew where you lived so I could buy you a beer! Thank you so much for your help. I'm going to work now on converting th…
Answer: How to map geneIds to ENTREZIDs
by
James W. MacDonald
62k
You are close. But note that the geneIds in your `GRanges` object are NCBI Gene IDs, which used to be called Entrez Gene IDs, and which are…
Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper
by
k.roelfs
• 0
Just so I don't make a mistake, do I just tell voomLmFit if a sample is a pool or a replicate independent of each group, or do I have to sp…
Votes
Comment: Error in .order_seqlevels(chrom_sizes[, "chrom"]) : !anyNA(m32) is not TRUE
Comment: Error in .order_seqlevels(chrom_sizes[, "chrom"]) : !anyNA(m32) is not TRUE
Answer: How to map geneIds to ENTREZIDs
Comment: ComplexHeatmap - Default distance and hierarchical clustering methods
Comment: Error in .order_seqlevels(chrom_sizes[, "chrom"]) : !anyNA(m32) is not TRUE
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James W. MacDonald
62k
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vs2001
▴ 30
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Mike Smith
★ 5.9k
Popular Question
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shepherl
3.4k
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Gordon Smyth
47k
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