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merge
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reset
2
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5
replies
4.1k
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Merging multiple single cell experiment objects from different samples
sce
SingleCellExperiment
merge
updated 14 months ago by
mollyab12
• 0 • written 2.0 years ago by
achoppe
▴ 10
1
vote
4
replies
1.5k
views
Merging two files based on the identifier column (gene symbols)?
merge
files
R
packages
gene annotations
4.6 years ago
mohammedtoufiq91
▴ 10
1
vote
2
replies
2.1k
views
Merging paired end Illumina reads in R
merge
updated 2.3 years ago by
mcmurdie
▴ 20 • written 8.6 years ago by
jpleonard2000
▴ 10
0
votes
2
replies
997
views
Problem in merging data frames
merge
merge data frames
updated 6.8 years ago by
Haiying.Kong
▴ 110 • written 6.8 years ago by
shadhiksk
• 0
2
votes
2
replies
1.0k
views
DataFrame compatible left_join (merge) operation supporting S4 complex columns that never reorders rows
s4
dataframe
left_join
merge
updated 5.0 years ago by
Hervé Pagès
16k • written 5.0 years ago by
Michael Steinbaugh
▴ 90
4
votes
1
reply
3.0k
views
Collapse/Reduce in GRanges by Metadata Column
granges
merge
reduce
updated 7.8 years ago by
Michael Lawrence
★ 11k • written 7.8 years ago by
nhejazi
• 0
0
votes
1
reply
1.9k
views
Merging files with gene expression data
merge
rnaseq
files
updated 7.5 years ago by
jayme.rickman
• 0 • written 7.5 years ago by
BioinfGuru
▴ 30
0
votes
0
replies
1.6k
views
How to keep track of gene names during WGCNA analysis for cutTreedynamic() and moduleEigengene()?
WGCNA
cbind
merge
match gene names and Eigengene/module/colorlabels
6.4 years ago
yifangt
▴ 20
8 results • Page
1 of 1
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Answer: DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR)
by
Michael Love
41k
> I got many p values that had "1.000000e+00" and padj "1" and stat of "0" when I added the Log threshold of LFC >1 and LFC < -1...is this …
Comment: Trying to use enrichGO
by
fernanda.backsouza
▴ 10
With all my love, thank you Guido, GOxploreR beeing a big ally for me. I don't know how to be grateful right now.
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.
Answer: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
swbarnes2
★ 1.3k
Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…
Comment: get BM error
by
James W. MacDonald
65k
I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…
Votes
Answer: How to retrieve gene ontology GO class from gene list?
Answer: How to retrieve gene ontology GO class from gene list?
C: when to apply quantile normalization with voom in limma/voom framework with RNA-
A: How to know if I should use voomWithQualityWeights() or not?
A: Weird results (ribosomal proteins / Y-linked genes) in limma/voom
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