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merge
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2
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5
replies
4.1k
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Merging multiple single cell experiment objects from different samples
sce
SingleCellExperiment
merge
updated 14 months ago by
mollyab12
• 0 • written 2.0 years ago by
achoppe
▴ 10
4
votes
1
reply
3.0k
views
Collapse/Reduce in GRanges by Metadata Column
granges
merge
reduce
updated 7.8 years ago by
Michael Lawrence
★ 11k • written 7.8 years ago by
nhejazi
• 0
1
vote
2
replies
2.1k
views
Merging paired end Illumina reads in R
merge
updated 2.3 years ago by
mcmurdie
▴ 20 • written 8.6 years ago by
jpleonard2000
▴ 10
0
votes
1
reply
1.9k
views
Merging files with gene expression data
merge
rnaseq
files
updated 7.5 years ago by
jayme.rickman
• 0 • written 7.5 years ago by
BioinfGuru
▴ 30
0
votes
0
replies
1.6k
views
How to keep track of gene names during WGCNA analysis for cutTreedynamic() and moduleEigengene()?
WGCNA
cbind
merge
match gene names and Eigengene/module/colorlabels
6.4 years ago
yifangt
▴ 20
1
vote
4
replies
1.5k
views
Merging two files based on the identifier column (gene symbols)?
merge
files
R
packages
gene annotations
4.6 years ago
mohammedtoufiq91
▴ 10
2
votes
2
replies
1.0k
views
DataFrame compatible left_join (merge) operation supporting S4 complex columns that never reorders rows
s4
dataframe
left_join
merge
updated 5.0 years ago by
Hervé Pagès
16k • written 5.0 years ago by
Michael Steinbaugh
▴ 90
0
votes
2
replies
997
views
Problem in merging data frames
merge
merge data frames
updated 6.8 years ago by
Haiying.Kong
▴ 110 • written 6.8 years ago by
shadhiksk
• 0
8 results • Page
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Comment: How to retrieve gene ontology GO class from gene list?
by
bandconductor
• 0
Thanks, this is potentially a much faster way than parsing BiomRt. However, it is only returning one GO term right now (biomaRt returns a f…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
James W. MacDonald
65k
Both `RUVseq` and `sva` are meant to be used to remove technical variability. The problem is the identification of variability that is tech…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
Alexandre
• 0
Hello James, Thank you very much for your answer and taking the time to read my post. I understand your remark, but isn't the approach o…
Comment: PCA plot suggestions
by
JKim
• 0
cross post: https://www.biostars.org/p/9593486/
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
James W. MacDonald
65k
You cannot correct for technical variability due to batch if samples are nested in batch. The technical and biological differences are comp…
Votes
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
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