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Comment: How to best visualize multi-level transcriptomics experiment data? by Ali Barry ▴ 10
Would `rowVars` work for your data structure?
Comment: How to best visualize multi-level transcriptomics experiment data? by mohammedtoufiq91 ▴ 10
@aliibarry Thank you for the information and inputs. I will work on the design further. Yes, `facet_wrap ` is a good suggestion. I will t…
Answer: How to best visualize multi-level transcriptomics experiment data? by Ali Barry ▴ 10
Hi Toufiq, a big part of this will be determining which factors actually contribute variance and are needed in your design. How does your d…
Comment: Print EnhancedVolcano Plot as jpeg or similar in R Notebook by Kevin Blighe 3.5k
Hi, I am the main developer of *EnhancedVolcano*. This question seems unrelated to any technical issue pertaining to the package. Irrespect…
Comment: Quantile Normalization after rma or not? by Yang Shi • 0
Thanks you so much sir! But I'm still confused with the boxplot showing here. Why oligo::rma could not get the plot like limma::normalizeBe…
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Answer: How to best visualize multi-level transcriptomics experiment data?
A: redundant probe sets in Affymetrix HG-U219
Answer: Quantile Normalization after rma or not?
Answer: Quantile Normalization after rma or not?
Answer: Using featureCounts and downloading Rsubread
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