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Comment: Which is the best type of data for correlation or survival analysis
by
Michael Love
37k
VST is the variance stabilizing transformation, and in the code it produces `vsd` a variance stabilized dataset. VST data = `vsd`.
> can I…
Comment: Error in Create switchAnalyzeRlist
by
bpshtiwan
▴
10
Definitely, you are right.
I Checked the ref file (cDNA fasta and gtf file ) gene Id is different. I downloaded both gtf and cDNA fasts fi…
Comment: errors in annotation
by
Josie
•
0
OK thanks James. I'll send off an email to GenBank, see if they feel inclined to correct some errors.
Answer: Conversion of UniProt to Ensembl
by
James W. MacDonald
60k
I will provide an example below. But first, there is a vignette for biomaRt (actually two), and it has extensive examples of how to use the…
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