Bioconductor Meta analysis

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microarray meta analysis

4.8 years ago lily ▴ 20

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690

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microarray microarray data Meta Analysis platform

updated 5.8 years ago by James W. MacDonald 67k • written 5.8 years ago by Jamal • 0

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1.3k

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microarray meta analysis cancer Software R

updated 5.9 years ago by James W. MacDonald 67k • written 5.9 years ago by Jamal • 0

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706

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MAMA pvalcombination meta analysis metaMA DEGs' indices

6.6 years ago niteshkumar20sept • 0

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908

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meta analysis

7.0 years ago lily ▴ 20

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limma camera cohen d meta analysis

7.8 years ago Andy91 ▴ 60

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1.4k

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rnaseq metaseq clc output pvalue meta analysis

updated 7.9 years ago by Koki ▴ 10 • written 7.9 years ago by hassangiahi • 0

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annotation genesymbols meta analysis

8.7 years ago wahaha123 • 0

8 results • Page 1 of 1

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Comment: Feature Counts - potential bug with outfile.jcounts by chris2.a.white • 0

Hi Gordon, Thank you for pointing out that FeatureCounts detects junction reads de novo. It is not in the manual, and maybe could be. Give…

Answer: Pre-filtering TPM kallisto for ssGSEA / DESeq2 by Michael Love 43k

I've seen in some papers ~1 TPM for saying something in mouse/human etc. was "minimally expressed". For an average length gene, 10 count…

Answer: Feature Counts - potential bug with outfile.jcounts by Gordon Smyth 52k

The behavior that you have documented is expected and is explained in the featureCounts documentation. The first thing to understand is th…

Answer: Feature Counts -R XS Read Assignment Tag by Gordon Smyth 52k

No, featureCounts cannot change the XS tag to a different tag, because that would change the information in the output. featureCounts needs…

Comment: Margins for gene_set_enrichment_plot by Leonardo Collado Torres ★ 1.1k

Thanks! This one might be worth remaking with `ComplexHeatmap`. Similar to https://github.com/LieberInstitute/spatialLIBD/pull/91 that was …

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Answer: Mapping Between GenBank ID's and Uniprot

Comment: What type of counts data to import for performing Isoform analysis in edgeR

A: Relations used in GO.db GOBPANCESTOR

Relations used in GO.db GOBPANCESTOR

Answer: RSubread output significantly different from bash Subread output

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