Bioconductor Meta analysis

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annotation genesymbols meta analysis

8.8 years ago wahaha123 • 0

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1.4k

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microarray meta analysis cancer Software R

updated 6.0 years ago by James W. MacDonald 67k • written 6.0 years ago by Jamal • 0

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703

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microarray microarray data Meta Analysis platform

updated 5.9 years ago by James W. MacDonald 67k • written 5.9 years ago by Jamal • 0

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meta analysis

7.1 years ago lily ▴ 20

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1.4k

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rnaseq metaseq clc output pvalue meta analysis

updated 8.0 years ago by Koki ▴ 10 • written 8.0 years ago by hassangiahi • 0

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microarray meta analysis

4.9 years ago lily ▴ 20

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limma camera cohen d meta analysis

7.9 years ago Andy91 ▴ 60

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727

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MAMA pvalcombination meta analysis metaMA DEGs' indices

6.7 years ago niteshkumar20sept • 0

8 results • Page 1 of 1

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Answer: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Following the discussion of this post, the package [gDNAx](https://bioconductor.org/packages/gDNAx) has been fixed in devel and release 1.4…

Answer: Selection of correct coefficients or contrasts in DESeq2 by James W. MacDonald 67k

Using R's model formulation for three-way interactions is probably not the way to go here. Or at least I wouldn't do it that way. An easier…

Comment: How to generate circular cnetplot and color nodes and edges in the same plot ? by Blandine • 0

Thank you so much ! It's working !

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by James W. MacDonald 67k

Yes. If you have the Illumina IDs, then all the annotation data that `cpg.annotate` uses will be based on hg19. It doesn't matter if TCGA l…

Comment: Recount3 data correspond to TCGA data by Leonardo Collado Torres ★ 1.1k

Thanks @fep29! ^^

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A: DESeq2 interaction term

Comment: Recount3 data correspond to TCGA data

Answer: DESeq2- merging technical vs biological replicates

Answer: SingleCellExperiment convenience function for metadata+expression?

How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.

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Popular Question to Robert Castelo ★ 3.4k

Popular Question to Robert Ivanek ▴ 750