Bioconductor Meta analysis

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annotation genesymbols meta analysis

8.8 years ago • updated 8.7 years ago wahaha123 • 0

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1.4k

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rnaseq metaseq clc output pvalue meta analysis

updated 8.0 years ago by Koki ▴ 10 • written 8.0 years ago by hassangiahi • 0

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1.4k

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microarray meta analysis cancer Software R

updated 6.0 years ago by James W. MacDonald 67k • written 6.0 years ago by Jamal • 0

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1.2k

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limma camera cohen d meta analysis

7.9 years ago Andy91 ▴ 60

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microarray meta analysis

4.9 years ago lily ▴ 20

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923

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meta analysis

7.1 years ago lily ▴ 20

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723

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MAMA pvalcombination meta analysis metaMA DEGs' indices

6.7 years ago niteshkumar20sept • 0

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699

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microarray microarray data Meta Analysis platform

updated 5.9 years ago by James W. MacDonald 67k • written 5.9 years ago by Jamal • 0

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Comment: Differential variability modelling with vst() expression by convincing.shark.jqvy • 0

Your approach to differential variability modeling using vst() looks promising! It mirrors the challenge of mastering levels in [Geometry D…

Answer: DESeq2 Heatmap by James W. MacDonald 67k

Two things. First, `scale` is already vectorized, so you don't have to use `apply`. You can instead just do `t(scale(t(mat)))` . Second, th…

Answer: Improve performance of qusage aggregateGeneSet by James W. MacDonald 67k

This support site is meant mostly to help people with questions about using Bioconductor packages rather than posting code improvements. I …

Answer: promoters_txdb <- promoters(txdb, upstream = 2000) is not 2000 by James W. MacDonald 67k

If you use `promoters` and do not provide an argument for something that has a default, you will get the default argument. Your last call t…

Comment: org.Hs.eg.db issue by k.panov • 0

installed R on another PC, works perfectly. ergo, problem outside of R probably..... :-(

Votes

Comment: DESeq2 for single cell pseudobulk processing

C: Limma: how to get same output as topTable but for all the genes ?

A: Processing agilent data by limma

A: Linear regression in DESeq2

Answer: Is there any chance to solve "the model matrix is not full rank" in DESeq2?

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