Showing : meta-analysis • reset
0
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941
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What does one-sided p-value in DESeq2 mean in biological terms?
one-sided nbinomWaldTest p-value meta-analysis DESeq2
updated 2.6 years ago by 41k • written 2.6 years ago by • 0
0
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11
replies
3.7k
views
Remove NaN from a list or replace NaN with a value.
R meta-analysis
updated 2.7 years ago by • 0 • written 5.4 years ago by ▴ 10
0
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7
replies
1.5k
views
Problem using load_raw() function in crossmeta R package
cross meta-analysis crossmeta
3.2 years ago michael.s • 0
3
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1
reply
508
views
Meta-Analysis: Start with counts?
meta-analysis
updated 4.9 years ago by ★ 28k • written 4.9 years ago by • 0
1
vote
2
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824
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Meta-analysis of RNAseq data
RNAseq meta-analysis microarray public data sets
updated 5.2 years ago by ▴ 110 • written 5.2 years ago by ▴ 90
0
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3
replies
1.8k
views
Algorithm for between and within microarray normalisation (for meta-analysis).
microarray meta-analysis gene expression
updated 5.3 years ago by 0 • written 7.7 years ago by ▴ 70
2
votes
1
reply
717
views
how do meta-analysis with Na p-value of DESeq2 ?
deseq2 meta-analysis metaseq
updated 6.8 years ago by 41k • written 6.8 years ago by • 0
0
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0
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840
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Meta-Analysis chip-seq data
chip-seq meta-analysis
6.9 years ago rezapanahi222 • 0
0
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0
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788
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tools or package for meta-analysis of chip-seq result
chipseq meta-analysis
6.9 years ago rezapanahi222 • 0
2
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4
replies
1.6k
views
R package for Meta-Analysis of CHIP-Seq data
chipseq meta-analysis ubuntu
6.9 years ago rezapanahi222 • 0
6
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4
replies
2.9k
views
Meta-analysis of microarrays (and RNA-seq) data
meta-analysis
updated 7.0 years ago by ▴ 110 • written 7.0 years ago by ▴ 40
3
votes
6
replies
1.3k
views
Possible approach of compare/interpret RNA-Seq results with microarray gene expression describing the same phenotype
microarray rnaseq DEgenes meta-analysis limma
updated 7.2 years ago by ★ 28k • written 7.2 years ago by ▴ 830
0
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1
reply
1.0k
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meta analysis of p value data by metaseq package
rnaseq meta-analysis p values
7.3 years ago hassangiahi • 0
0
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1
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929
views
Meta-analysis on rna-seq data without replicates
meta-analysis rnaseq metarnaseq
updated 7.5 years ago by 41k • written 7.5 years ago by ▴ 10
2
votes
5
replies
2.6k
views
Question on how to proceed and analyze 9 microarray datasets of two different platforms to perform meta-analysis
microarray meta-analysis cross-platform normalization statistical inference
updated 7.8 years ago by ▴ 110 • written 8.2 years ago by ▴ 80
3
votes
6
replies
2.0k
views
Comparison of DE lists from different datasets of same microarray platform
microarray DE-comparison meta-analysis scatter-plot limma
8.1 years ago Konstantinos Yeles ▴ 80
0
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0
replies
1.7k
views
MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list'
MetaDE meta-analysis
8.2 years ago alexvpickering ▴ 110
4
votes
4
replies
1.3k
views
Comparing DE probes from same-platform microarrays
limma microarray meta-analysis
updated 8.3 years ago by 50k • written 8.3 years ago by ▴ 10
4
votes
1
reply
2.3k
views
Meta-analysis of gene expression data by 'MetaDE'
r meta-analysis MetaDE
updated 8.3 years ago by ▴ 150 • written 8.7 years ago by ▴ 260
2
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4
replies
2.8k
views
Meta-Analysis after running limma on a normalized dataset
meta-analysis limma toptable
updated 8.8 years ago by ★ 28k • written 8.8 years ago by ▴ 20
20 results • Page 1 of 1
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Answer: Cannabis and KEGGgraph by deeenes ▴ 30
Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…
Answer: RNAseq:Technical replicates from different batches by Gordon Smyth 50k
I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…
Comment: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param by russ.bainer ▴ 10
Hi, I'm hitting this too. As far as I can tell my DataTrack is fine, but perhaps I am missing something. Notably the same code works on o…
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Chris • 0
Hi Robert, If I don't want to use all pathway in c2 gene set but only a few pathways of interested, how can I do that? So we try to get a …
Comment: How to retrieve detailed regression results from deseq2 by Weiqian ▴ 10
Hi Michael, thanks for the answer! I'll have a look : )
Votes
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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