Showing : meta-analysis • reset
2
votes
4
replies
1.5k
views
R package for Meta-Analysis of CHIP-Seq data
chipseq meta-analysis ubuntu
6.9 years ago rezapanahi222 • 0
2
votes
5
replies
2.6k
views
Question on how to proceed and analyze 9 microarray datasets of two different platforms to perform meta-analysis
microarray meta-analysis cross-platform normalization statistical inference
updated 7.8 years ago by ▴ 110 • written 8.2 years ago by ▴ 80
3
votes
6
replies
2.0k
views
Comparison of DE lists from different datasets of same microarray platform
microarray DE-comparison meta-analysis scatter-plot limma
8.1 years ago Konstantinos Yeles ▴ 80
3
votes
6
replies
1.3k
views
Possible approach of compare/interpret RNA-Seq results with microarray gene expression describing the same phenotype
microarray rnaseq DEgenes meta-analysis limma
updated 7.2 years ago by ★ 28k • written 7.2 years ago by ▴ 830
4
votes
4
replies
1.3k
views
Comparing DE probes from same-platform microarrays
limma microarray meta-analysis
updated 8.3 years ago by 50k • written 8.3 years ago by ▴ 10
0
votes
1
reply
936
views
What does one-sided p-value in DESeq2 mean in biological terms?
one-sided nbinomWaldTest p-value meta-analysis DESeq2
updated 2.6 years ago by 41k • written 2.6 years ago by • 0
2
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4
replies
2.8k
views
Meta-Analysis after running limma on a normalized dataset
meta-analysis limma toptable
updated 8.7 years ago by ★ 28k • written 8.7 years ago by ▴ 20
4
votes
1
reply
2.3k
views
Meta-analysis of gene expression data by 'MetaDE'
r meta-analysis MetaDE
updated 8.3 years ago by ▴ 150 • written 8.7 years ago by ▴ 260
6
votes
4
replies
2.9k
views
Meta-analysis of microarrays (and RNA-seq) data
meta-analysis
updated 7.0 years ago by ▴ 110 • written 7.0 years ago by ▴ 40
2
votes
1
reply
715
views
how do meta-analysis with Na p-value of DESeq2 ?
deseq2 meta-analysis metaseq
updated 6.8 years ago by 41k • written 6.8 years ago by • 0
0
votes
11
replies
3.7k
views
Remove NaN from a list or replace NaN with a value.
R meta-analysis
updated 2.7 years ago by • 0 • written 5.4 years ago by ▴ 10
1
vote
2
replies
820
views
Meta-analysis of RNAseq data
RNAseq meta-analysis microarray public data sets
updated 5.2 years ago by ▴ 110 • written 5.2 years ago by ▴ 90
3
votes
1
reply
508
views
Meta-Analysis: Start with counts?
meta-analysis
updated 4.9 years ago by ★ 28k • written 4.9 years ago by • 0
0
votes
3
replies
1.8k
views
Algorithm for between and within microarray normalisation (for meta-analysis).
microarray meta-analysis gene expression
updated 5.3 years ago by 0 • written 7.7 years ago by ▴ 70
0
votes
1
reply
1.0k
views
meta analysis of p value data by metaseq package
rnaseq meta-analysis p values
7.3 years ago hassangiahi • 0
0
votes
1
reply
929
views
Meta-analysis on rna-seq data without replicates
meta-analysis rnaseq metarnaseq
updated 7.5 years ago by 41k • written 7.5 years ago by ▴ 10
0
votes
7
replies
1.5k
views
Problem using load_raw() function in crossmeta R package
cross meta-analysis crossmeta
3.2 years ago • updated 3.1 years ago michael.s • 0
0
votes
0
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1.7k
views
MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list'
MetaDE meta-analysis
8.1 years ago alexvpickering ▴ 110
0
votes
0
replies
788
views
tools or package for meta-analysis of chip-seq result
chipseq meta-analysis
6.9 years ago rezapanahi222 • 0
0
votes
0
replies
840
views
Meta-Analysis chip-seq data
chip-seq meta-analysis
6.9 years ago rezapanahi222 • 0
20 results • Page 1 of 1
Recent ...
Replies
Comment: DEG with low counts by Rajat • 0
Dear Dr. Michael Thanks for you quick reply. I appreciate it. Attached is the plotcounts for one gene. I am experiencing like this in oth…
Comment: Light difference when using coef vs omit a group when compare 3 groups. by Chris • 0
Hi Gordon, thank you so much for your guide! I check my data as you said there is no difference in my data. This is the MDS plot at genes l…
Comment: How to correct for known and surrogate variables in DESeq2? by Michael Love 41k
To question 3: if you model technical variation using only ~group vs ~1, then it will be correlated with known technical variables, which y…
Answer: flowStats Search Error by shepherl 3.8k
We are aware of an issue with bioconductor.org search and are investigating. We apologize for an inconvenience this is causing.
Comment: How to correct for known and surrogate variables in DESeq2? by nhaus ▴ 30
Hey Crystal, did you end up getting advice? I am facing the exact same questions that you are having right now. Would be very grateful if y…
Votes
Answer: Light difference when using coef vs omit a group when compare 3 groups.
C: Add new columns to DESeqResults from text file by matching rownames.
Answer: geneList error in clusterprofiler
Comment: Memory errors using read.bismark?
Comment: Not fully paired differential gene expression analysis
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