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Comment: Help with the beadarray package by Gordon Smyth 43k
Do the output files include an idat file for each sample?
Comment: How to analyze 10 samples (5 control, 5 treatment) which perform the experiment by Michael Love 34k
See the FAQ.
Comment: Problem installing S4Vectors on Mac Mini M1 Big Sur by Mike Smith ★ 5.2k
You have not answered Hervé's question about whether there are also problems installing other packages from source. That information would…
Answer: Problem installing S4Vectors on Mac Mini M1 Big Sur by Richard • 0
I should add things were fine until I upgraded to R 4.1
Comment: How to analyze 10 samples (5 control, 5 treatment) which perform the experiment by Yosapol • 0
Thank you very much @mikelove , I followed the vignette and discussion on this forum. It is very useful. I have seen that when we put ~batc…
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Comment: Contrast treated samples against both scramble and untreated controls
Comment: Model matrix not full rank, then
Testing three-way interactions in DESeq2
Answer: Contrast treated samples against both scramble and untreated controls
Comment: DESeq2 Normalization
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