Showing : metabolomics • reset
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limma on spectral data
limma Metabolomics DifferentialExpression POMA
updated 4 months ago by 47k • written 4 months ago by • 0
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What does it mean when the permI set to different values give the same result
Metabolomics ropls
updated 5 months ago by ▴ 40 • written 5 months ago by • 0
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2
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261
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Error received in ropls package
Metabolomics ropls
updated 6 months ago by ▴ 40 • written 6 months ago by • 0
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237
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msPurity::spectralMatching Error in getSmeta(con, pids) : No meta data for spectra available
msPurity Metabolomics Bioconductor xcms spectralMatching
updated 4 months ago by • 0 • written 7 months ago by ▴ 10
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OPLS-DA: confidence interval for accuracy metric
Metabolomics
9 months ago Eddie • 0
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209
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Negative Q2Y
Metabolomics
10 months ago Eddie • 0
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Plot of variable importance
Metabolomics
10 months ago Eddie • 0
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Code for the Q2Ys from permutation test
Metabolomics
updated 11 months ago by ▴ 40 • written 11 months ago by • 0
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ROC plot for OPLS-DA
Metabolomics
updated 11 months ago by ▴ 40 • written 14 months ago by • 0
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OPLS-DA: values of pR2Y and pR2Q
Metabolomics
14 months ago • updated 11 months ago Eddie • 0
10 results • Page 1 of 1
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Comment: Extract Limma Adjusted Values for Plotting by phelankj • 0
Thanks, on the normalized values using the same formula?
Answer: Extract Limma Adjusted Values for Plotting by James W. MacDonald 63k
You should use `removeBatchEffect` for that.
Comment: Interpret plot from DiffBind by Chris • 0
Thank you for the explanation! The purple (**gain**) in the control in the right bottom corner but on the y axis is labeled **loss** which …
Comment: Use with_go along with other filters in getBM function by RuBBiT0 ▴ 10
Thank you! I think that makes much sense to me.
Comment: Interpret plot from DiffBind by Rory Stark ★ 4.9k
Not necessarily. It look to me like there is reconfiguring going on, with some chromatin that was open in the control becoming closed (the …
Votes
Answer: NA transcript values in my Txdb
Comment: Interpret plot from DiffBind
Answer: Use with_go along with other filters in getBM function
Answer: Use with_go along with other filters in getBM function
Answer: Interpret plot from DiffBind
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