Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
metabolomics
•
reset
16
votes
12
replies
2.2k
views
VST transformation (DESeq2) for metabolomics data
vst
Metabolomics
DESeq2
23 months ago
Joan Miró
▴ 80
2
votes
9
replies
2.6k
views
Unexpected total ion count (TIC) with xcms package
xcms
metabolomics
updated 8.9 years ago by
Thomas Lin Pedersen
▴ 70 • written 8.9 years ago by
Johannes Rainer
★ 2.0k
5
votes
7
replies
2.2k
views
XCMS obiwarp adjustRtime issue
xcms
obiwarp
adjustrtime
metabolomics
updated 6.4 years ago by
Johannes Rainer
★ 2.0k • written 6.4 years ago by
bhgyu
▴ 30
4
votes
7
replies
1.9k
views
Issues uploading database for metabolomic data analysis with Pathway Activity Profiling - PAPi
papi
metabolomics
pathway analysis
updated 7.1 years ago by
k_hulce
▴ 10 • written 8.0 years ago by
hp71727
▴ 10
0
votes
6
replies
2.6k
views
Help Error could not find function xcmsSet
xcms
metabolomics
mzr rcpp
ramp
7.9 years ago
dfrtyu
• 0
0
votes
5
replies
1.5k
views
ROC plot for OPLS-DA
Metabolomics
updated 21 months ago by
etienne.thevenot
▴ 40 • written 24 months ago by
Eddie
• 0
0
votes
5
replies
1.2k
views
runInfo returns startTimeStamp -infinity
lcms
mzR
metabolomics
xcms
MSnbase
updated 4.6 years ago by
Laurent Gatto
1.6k • written 4.6 years ago by
pol.soladelossantos
• 0
1
vote
4
replies
2.2k
views
How to get from xcmsRaw to a xcmsSet
xcms
metabolomics
updated 8.9 years ago by
Thomas Lin Pedersen
▴ 70 • written 8.9 years ago by
Johannes Rainer
★ 2.0k
0
votes
4
replies
2.0k
views
OPLS-DA: values of pR2Y and pR2Q
Metabolomics
2.0 years ago • updated 21 months ago
Eddie
• 0
0
votes
4
replies
2.7k
views
mzR could not be loaded on XCMS
xcms
msdata
mzR
Rcpp
metabolomics
8.2 years ago
Titan
• 0
0
votes
4
replies
2.8k
views
XCMS for targeted metabolomic/lipidomics/proteomics
xcms
metabolomics
lipidomics
statistics
8.2 years ago
Titan
• 0
0
votes
4
replies
813
views
ProFIA package error for noise estimation
software error
proFIA
HRMS
FIA
Metabolomics
updated 3.9 years ago by
Kevin Blighe
★ 3.9k • written 3.9 years ago by
Esther G.
• 0
1
vote
3
replies
2.5k
views
XCMS2 on MSMS data
xcms
metabolomics
massspectrometry
lipidomics
bioconductor
8.2 years ago
Titan
• 0
0
votes
3
replies
2.4k
views
Difference between methods getEIC and rawEIC for xcmsRaw classes
xcms
metabolomics
8.9 years ago
Johannes Rainer
★ 2.0k
0
votes
3
replies
2.0k
views
Problem with XCMS
xcms
metabolomics
lipidomics
proteomics
massspectrometry
8.2 years ago
Titan
• 0
3
votes
3
replies
2.2k
views
installing xcms and faahKO package
metabolomics
updated 6.5 years ago by
Laurent Gatto
1.6k • written 6.5 years ago by
Ali.Moazzami
▴ 10
0
votes
3
replies
1.6k
views
metabolomics data analysis
Metabolomics
Metabolomics
updated 10.6 years ago by
Laurent Gatto
1.6k • written 10.6 years ago by
Guest User
★ 13k
0
votes
2
replies
751
views
OPLS-DA: confidence interval for accuracy metric
Metabolomics
19 months ago
Eddie
• 0
1
vote
2
replies
1.1k
views
calculate theoretical isotope distribution give the AA sequence
Metabolomics
proteomics
MassSpectrometry
3.3 years ago
Oliver
• 0
0
votes
2
replies
745
views
variableMetadata for metabolites dataset
Metabolomics
updated 23 months ago by
Etienne
• 0 • written 2.1 years ago by
Eddie
• 0
0
votes
2
replies
681
views
Error received in ropls package
Metabolomics
ropls
updated 16 months ago by
etienne.thevenot
▴ 40 • written 16 months ago by
ansari.maya022
• 0
3
votes
2
replies
3.1k
views
limma for metabolite data
limma
metabolomics
limma paired analysis
updated 2.4 years ago by
Francisco
• 0 • written 7.0 years ago by
mahes.muniandy
• 0
0
votes
2
replies
1.7k
views
Extracting subclusters from original data
complexheatmap
metabolomics
updated 6.7 years ago by
sina.nassiri
▴ 130 • written 6.7 years ago by
Mina
• 0
1
vote
2
replies
1.4k
views
Package won't recognise raw data files
camera
metabolomics
r
6.4 years ago
bhgyu
▴ 30
0
votes
1
reply
1.5k
views
metaMS for analysis of GC-MS data
metaMS
xcms
GC-MS
metabolomics
volatile organic compounds
updated 7.8 years ago by
ron.wehrens
▴ 20 • written 7.8 years ago by
lucie.conchou
• 0
0
votes
1
reply
1.3k
views
findneutral xcms xcmsSet
R
metabolomics
LC-MS
xcms
readMzXmlData
updated 7.5 years ago by
James W. MacDonald
65k • written 7.5 years ago by
micheleserra
• 0
0
votes
1
reply
1.1k
views
MAIT - suppress interactive mode
mait
metabolomics
updated 9.1 years ago by
Dan Tenenbaum
★ 8.2k • written 9.1 years ago by
dilara.ally
• 0
0
votes
1
reply
1.2k
views
OPLS-DA permutation test
Metabolomics
updated 23 months ago by
etienne.thevenot
▴ 40 • written 23 months ago by
Eddie
• 0
0
votes
1
reply
711
views
compute molecular mass from chemical formula
Metabolomics
written 2.9 years ago by
wewolski
▴ 10
0
votes
1
reply
1.0k
views
MAIT or Specmine
metabolomics
mait
specmine
mass spectrometry
6.4 years ago
bhgyu
▴ 30
0
votes
1
reply
804
views
OPLS-DA for paired samples
Metabolomics
updated 23 months ago by
etienne.thevenot
▴ 40 • written 2.1 years ago by
Eddie
• 0
3
votes
1
reply
2.1k
views
Tutorial:
Mass Spectrometry Data Analysis with the Spectra Package
mass spectrometry
proteomics
metabolomics
Tutorial
written 3.5 years ago by
Johannes Rainer
★ 2.0k
0
votes
1
reply
1.1k
views
suggestion for metabolomics packages
metabolomics
9.0 years ago
marco fabbri
▴ 320
0
votes
1
reply
571
views
msPurity::spectralMatching Error in getSmeta(con, pids) : No meta data for spectra available
msPurity
Metabolomics
Bioconductor
xcms
spectralMatching
updated 14 months ago by
thomas.nigel.lawson
• 0 • written 17 months ago by
hp71727
▴ 10
0
votes
1
reply
1.4k
views
Metabolite identification package
xcms
massspectrometry
metabolomics
updated 5.9 years ago by
Johannes Rainer
★ 2.0k • written 5.9 years ago by
johnhamre3
• 0
0
votes
1
reply
530
views
What does it mean when the permI set to different values give the same result
Metabolomics
ropls
updated 15 months ago by
etienne.thevenot
▴ 40 • written 15 months ago by
ansari.maya022
• 0
0
votes
1
reply
1.5k
views
OPLS package with @subsetVi = numeric(0)
metabolomicsWorkbenchR
PLS
OPLS
Metabolomics
ropls
updated 2.7 years ago by
etienne.thevenot
▴ 40 • written 2.7 years ago by
Fernando
• 0
0
votes
1
reply
1.2k
views
Permutation test for OPLS-DA
Metabolomics
updated 23 months ago by
etienne.thevenot
▴ 40 • written 2.1 years ago by
Eddie
• 0
0
votes
1
reply
535
views
limma on spectral data
limma
Metabolomics
DifferentialExpression
POMA
updated 14 months ago by
Gordon Smyth
50k • written 14 months ago by
wiscoyogi
• 0
0
votes
1
reply
641
views
Code for the Q2Ys from permutation test
Metabolomics
updated 21 months ago by
etienne.thevenot
▴ 40 • written 21 months ago by
Eddie
• 0
0
votes
1
reply
806
views
How to make OPLS-DA variable importance plot
crlmm
ropls
Metabolomics
updated 9 months ago by
James W. MacDonald
65k • written 9 months ago by
Charlotte
• 0
1
vote
0
replies
741
views
Job:
Metabolomics Bioinformatics Postdoc Position at Steno Diabetes Center Copenhagen
metabolomics
lipidomics
clinical research
data integration
biostatistics
Job
4.1 years ago
Tommi Suvitaival
▴ 10
0
votes
0
replies
2.5k
views
Postdoctoral Fellow - Bioinformatics - Singapore, IMCB, Biopolis
Genetics
Metabolomics
Pathways
Cancer
Genetics
Metabolomics
Pathways
Cancer
12.5 years ago
Emilie Bard
▴ 10
0
votes
0
replies
1.2k
views
PLGEM on metabolomic data?
miRNA
Metabolomics
Proteomics
Normalization
plgem
miRNA
Metabolomics
Proteomics
plgem
11.5 years ago
Norman Pavelka
▴ 140
0
votes
0
replies
1.5k
views
John Innes Centre, UK - Statistician Position
Genetics
Metabolomics
Genetics
Metabolomics
20.3 years ago
david lowe JIC
▴ 10
0
votes
0
replies
858
views
tricky batch problem
Metabolomics
Regression
Metabolomics
Regression
17.4 years ago
E. Schwarz
▴ 10
0
votes
0
replies
1.9k
views
vacancy postdoc or PhD in the Netherlands
Metabolomics
Network
Organism
Metabolomics
Network
Organism
15.0 years ago
Hendriks, M.
▴ 10
0
votes
0
replies
1.2k
views
COURSE: Introduction to Metabolomics and biomarker research
Metabolomics
Metabolomics
14.5 years ago
Matthias Kohl
▴ 160
0
votes
0
replies
1.2k
views
Bioinformatics position, Austria
Metabolomics
Visualization
Metabolomics
Visualization
14.2 years ago
David Enot
▴ 30
0
votes
0
replies
1.3k
views
'Cheminformatics in R' workshop at the EBI: 17-18 May 2010
Metabolomics
Cheminformatics
Visualization
xcms
Metabolomics
Cheminformatics
Visualization
14.1 years ago
Gabriella Rustici
▴ 60
50 results • Page
1 of 1
Recent ...
Replies
Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
by
Michael Love
41k
May be documented by the software you are using? https://github.com/lpantano/DEGreport
Answer: Doing comparison of RNA-seq data using Deseq2
by
Michael Love
41k
Take a look at our workflow, this starts from a beginner's level. You could export from Excel using CSV or TSV, then read into R. htt…
Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Votes
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
Awards
• All
Popular Question
to
michael.s
• 0
Popular Question
to
James W. MacDonald
65k
Popular Question
to
Pierre Lindenbaum
▴ 10
Popular Question
to
Gordon Smyth
50k
Popular Question
to
Jenny Drnevich
★ 2.0k
Locations
• All
United States,
8 minutes ago
Austria,
15 minutes ago
United Kingdom,
20 minutes ago
United States,
22 minutes ago
United States,
24 minutes ago
Traffic: 718 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6