Showing : metabolomics • reset
5
votes
7
replies
1.0k
views
XCMS obiwarp adjustRtime issue
xcms obiwarp adjustrtime metabolomics
updated 3.9 years ago by ★ 1.9k • written 3.9 years ago by ▴ 30
4
votes
7
replies
1.1k
views
Issues uploading database for metabolomic data analysis with Pathway Activity Profiling - PAPi
papi metabolomics pathway analysis
updated 4.6 years ago by ▴ 10 • written 5.4 years ago by ▴ 10
3
votes
0
replies
426
views
Tutorial: Mass Spectrometry Data Analysis with the Spectra Package
mass spectrometry proteomics metabolomics Tutorial
11 months ago Johannes Rainer ★ 1.9k
3
votes
3
replies
1.2k
views
installing xcms and faahKO package
metabolomics
updated 4.0 years ago by 1.5k • written 4.0 years ago by ▴ 10
2
votes
1
reply
1.6k
views
limma for metabolite data
limma metabolomics limma paired analysis
updated 4.4 years ago by ★ 27k • written 4.4 years ago by • 0
2
votes
0
replies
242
views
Job: PostDoc position for the analysis of large scale metabolomics data
metabolomics proteomics Job
12 months ago Johannes Rainer ★ 1.9k
2
votes
9
replies
1.6k
views
Unexpected total ion count (TIC) with xcms package
xcms metabolomics
updated 6.4 years ago by ▴ 70 • written 6.4 years ago by ★ 1.9k
1
vote
4
replies
1.5k
views
How to get from xcmsRaw to a xcmsSet
xcms metabolomics
updated 6.4 years ago by ▴ 70 • written 6.4 years ago by ★ 1.9k
1
vote
2
replies
657
views
Package won't recognise raw data files
camera metabolomics r
3.8 years ago bhgyu ▴ 30
1
vote
2
replies
222
views
calculate theoretical isotope distribution give the AA sequence
Metabolomics proteomics MassSpectrometry
9 months ago • updated 8 months ago Oliver • 0
1
vote
0
replies
138
views
Normalization of metabolomics/lipidomics data for limma
Lipidomics Metabolomics limma Normalization
11 weeks ago pgugger ▴ 60
1
vote
0
replies
153
views
Job: Metabolomics Bioinformatics Postdoc Position at Steno Diabetes Center Copenhagen
metabolomics lipidomics clinical research data integration biostatistics Job
19 months ago Tommi Suvitaival ▴ 10
1
vote
3
replies
1.7k
views
XCMS2 on MSMS data
xcms metabolomics massspectrometry lipidomics bioconductor
5.7 years ago Titan • 0
0
votes
3
replies
1.7k
views
Difference between methods getEIC and rawEIC for xcmsRaw classes
xcms metabolomics
6.4 years ago Johannes Rainer ★ 1.9k
0
votes
0
replies
1.2k
views
Job: Data scientist/bioinformatician - Paris
Genomics metabolomics biostatistics data integration Job
5.9 years ago David Enot ▴ 30
0
votes
4
replies
1.7k
views
mzR could not be loaded on XCMS
xcms msdata mzR Rcpp metabolomics
5.7 years ago Titan • 0
0
votes
4
replies
1.7k
views
XCMS for targeted metabolomic/lipidomics/proteomics
xcms metabolomics lipidomics statistics
5.7 years ago Titan • 0
0
votes
3
replies
1.2k
views
Problem with XCMS
xcms metabolomics lipidomics proteomics massspectrometry
5.7 years ago Titan • 0
0
votes
0
replies
731
views
fillPeaks not calculating "intb" values.
xcms metabolomics
5.6 years ago Johannes Rainer ★ 1.9k
0
votes
6
replies
1.4k
views
Help Error could not find function xcmsSet
xcms metabolomics mzr rcpp ramp
5.4 years ago grateshak • 0
0
votes
1
reply
882
views
metaMS for analysis of GC-MS data
metaMS xcms GC-MS metabolomics volatile organic compounds
updated 5.3 years ago by ▴ 20 • written 5.3 years ago by • 0
0
votes
1
reply
743
views
findneutral xcms xcmsSet
R metabolomics LC-MS xcms readMzXmlData
updated 4.9 years ago by 58k • written 4.9 years ago by • 0
0
votes
2
replies
1.1k
views
Extracting subclusters from original data
complexheatmap metabolomics
updated 4.1 years ago by ▴ 110 • written 4.1 years ago by • 0
0
votes
1
reply
516
views
MAIT or Specmine
metabolomics mait specmine mass spectrometry
3.9 years ago bhgyu ▴ 30
0
votes
0
replies
528
views
CAMERA error - isotopeProportionFits
camera metabolomics
3.7 years ago bhgyu ▴ 30
0
votes
0
replies
469
views
Job: Postdoctoral Position: Posttranscriptional gene regulation in T cells (analysis of RNAseq, metabolomics)
Basel switzerland RNAseq metabolomics Job
3.4 years ago Robert Ivanek ▴ 690
0
votes
1
reply
445
views
Metabolite identification package
xcms massspectrometry metabolomics
updated 3.4 years ago by ★ 1.9k • written 3.4 years ago by • 0
0
votes
0
replies
364
views
'names' attribute must be the same length as the vector - PAPi problems
PAPi metabolomics pathway analysis raphael
3.2 years ago maryke.wijma • 0
0
votes
0
replies
693
views
Job: Postdoctoral researcher in Computational Metabolomics
xcms metabolomics population metabolism job Job
updated 2.7 years ago by • 0 • written 2.8 years ago by ★ 1.9k
0
votes
0
replies
383
views
Job: Postdoctoral researcher in Computational Metabolomics
metabolomics xcms Job
2.6 years ago Johannes Rainer ★ 1.9k
0
votes
0
replies
295
views
How to integrate and visualize RNASeq / Proteomics data for metabolomics pathways?
r metabolomics KEGG Proteomics Transcriptomics
2.5 years ago Wuschel ▴ 10
0
votes
5
replies
357
views
runInfo returns startTimeStamp -infinity
lcms mzR metabolomics xcms MSnbase
updated 2.0 years ago by 1.5k • written 2.0 years ago by • 0
0
votes
4
replies
172
views
ProFIA package error for noise estimation
software error proFIA HRMS FIA Metabolomics
updated 16 months ago by 3.4k • written 16 months ago by • 0
0
votes
1
reply
116
views
OPLS package with @subsetVi = numeric(0)
metabolomicsWorkbenchR PLS OPLS Metabolomics ropls
updated 7 weeks ago by ▴ 20 • written 7 weeks ago by • 0
0
votes
0
replies
810
views
Bioconductor 2.4 is released
Microarray qPCR Metabolomics Annotation Normalization graph flowCore Microarray qPCR
12.4 years ago Patrick Aboyoun 1.6k
0
votes
1
reply
135
views
compute molecular mass from chemical formula
Metabolomics
written 4 months ago by ▴ 10
0
votes
0
replies
2.0k
views
Postdoctoral Fellow - Bioinformatics - Singapore, IMCB, Biopolis
Genetics Metabolomics Pathways Cancer Genetics Metabolomics Pathways Cancer
10.0 years ago Emilie Bard ▴ 10
0
votes
0
replies
860
views
PLGEM on metabolomic data?
miRNA Metabolomics Proteomics Normalization plgem miRNA Metabolomics Proteomics plgem
9.0 years ago Norman Pavelka ▴ 140
0
votes
0
replies
1.1k
views
John Innes Centre, UK - Statistician Position
Genetics Metabolomics Genetics Metabolomics
17.7 years ago david lowe JIC ▴ 10
0
votes
0
replies
562
views
tricky batch problem
Metabolomics Regression Metabolomics Regression
14.8 years ago E. Schwarz ▴ 10
0
votes
0
replies
1.5k
views
vacancy postdoc or PhD in the Netherlands
Metabolomics Network Organism Metabolomics Network Organism
12.5 years ago Hendriks, M. ▴ 10
0
votes
0
replies
803
views
COURSE: Introduction to Metabolomics and biomarker research
Metabolomics Metabolomics
12.0 years ago Matthias Kohl ▴ 160
0
votes
0
replies
857
views
Bioinformatics position, Austria
Metabolomics Visualization Metabolomics Visualization
11.6 years ago David Enot ▴ 30
0
votes
0
replies
840
views
'Cheminformatics in R' workshop at the EBI: 17-18 May 2010
Metabolomics Cheminformatics Visualization xcms Metabolomics Cheminformatics Visualization
11.6 years ago Gabriella Rustici ▴ 60
0
votes
0
replies
3.0k
views
Bioconductor 2.14 is released
BiocViews aCGH SNP Sequencing RNASeq ChIPSeq miRNA Microarray qPCR Metabolomics Coverage
7.4 years ago Dan Tenenbaum ★ 8.2k
0
votes
3
replies
1.1k
views
metabolomics data analysis
Metabolomics Metabolomics
updated 8.0 years ago by 1.5k • written 8.0 years ago by ★ 12k
0
votes
1
reply
670
views
MAIT - suppress interactive mode
mait metabolomics
updated 6.6 years ago by ★ 8.2k • written 6.6 years ago by • 0
0
votes
1
reply
771
views
suggestion for metabolomics packages
metabolomics
6.4 years ago marco fabbri ▴ 320
48 results • Page 1 of 1
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Comment: Macbook M1 install genefilter failed by Alexandre • 0
Michael, Do you have perhaps R binary installed for Intel chips ? Mine is arm64.pkg. I read somehwhere the binary for Intel chips works f…
Comment: Macbook M1 install genefilter failed by Alexandre • 0
[n] stops the installation. I've tried to force since it is installed already and then I tried `none` as you said. > BiocManager::inst…
Answer: Error in makeTxDbFromGFF(txomeInfo$gtf) by Michael Love 34k
I see that tximeta found a linked transcriptome. Can you show this part of your code as well? How did you create the `linkedTxome`?
Comment: EdgeR, tumor normal pair, no replicatie but multiple patients, to focus on indi by Gordon Smyth 43k
You need to start by doing an ordinary paired analysis.
Comment: Recalculated abundance data output table with DEseq2 by Michael Love 34k
Yes, DESeq() then results(). When you print the table it will say MLE. No we don’t have a function to do that.
Votes
Answer: Degust: what normalization method does it use
Answer: ylim and xlim in Enhanced Volcano
Answer: EdgeR, tumor normal pair, no replicatie but multiple patients, to focus on indi
Error in .rowNamesDF<-(x, value = value) :duplicate row.names are not allowed DESeq2
Comment: How to build a GRangesList where each GRanges element is a CDS coordinate of gen
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