Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
metadata
•
reset
1
vote
2
replies
816
views
Obtain metadata for software packages in Bioconductor
metadata
2.9 years ago
Donghui
▴ 10
2
votes
2
replies
1.2k
views
How to access metadata of GAlignments objects
rtracklayer
Rsamtools
GAlignments
GRanges
metadata
updated 3.9 years ago by
Hervé Pagès
16k • written 3.9 years ago by
Robert
▴ 10
2
votes
1
reply
1.2k
views
combining columns for experimental design in DESeq2
deseq2
design
metadata
updated 4.3 years ago by
sebastian.lobentanzer
▴ 50 • written 4.3 years ago by
Assa Yeroslaviz
★ 1.5k
0
votes
2
replies
1.1k
views
Recount2 TCGA metadata missing sample, run and experiment columns
recount
metadata
tcga
updated 6.2 years ago by
rosabellascottgm
• 0 • written 6.2 years ago by
Mariela Cortés-López
• 0
2
votes
2
replies
1.4k
views
[VariantAnnotation] Preserve query metadata with locateVariants()
variantannotation
locatevariants
metadata
mcols
updated 6.4 years ago by
Valerie Obenchain
★ 6.8k • written 6.4 years ago by
enricoferrero
▴ 660
4
votes
3
replies
4.7k
views
What is the proper way to modify mcols of a GRanges inside a GRangesList?
granges
metadata
updated 6.9 years ago by
Michael Lawrence
★ 11k • written 6.9 years ago by
Ryan C. Thompson
★ 7.9k
0
votes
4
replies
1.1k
views
Data structure for my dataset
metadata
grangeslist
granges
sample
updated 7.0 years ago by
Michael Lawrence
★ 11k • written 7.0 years ago by
Sim1pall8a
• 0
1
vote
2
replies
2.0k
views
Subsetting GRanges based on metadata
GRanges
metadata
subsetting
updated 7.7 years ago by
Michael Lawrence
★ 11k • written 7.7 years ago by
mdeea123
▴ 10
3
votes
7
replies
1.8k
views
Group GRanges and keep metadata
granges
metadata
coursera
updated 7.9 years ago by
Michael Lawrence
★ 11k • written 7.9 years ago by
likeeatingpizza
▴ 10
4
votes
2
replies
1.3k
views
distinguish DataSource from Provider and ProviderVersion in makeTxDbPackage
genomicfeatures
txdb
maketxdbfromgff
metadata
updated 8.0 years ago by
Valerie Obenchain
★ 6.8k • written 8.0 years ago by
TimothéeFlutre
▴ 80
2
votes
3
replies
2.2k
views
Metadata Missing from vcf when reading in with readVcfAsVRanges
variantannotation
vranges
readvcf
readvcfasvranges
metadata
9.2 years ago
summerela
• 0
1
vote
3
replies
1.9k
views
Fast way to access metadata for GRangesList?
grangeslist
metadata
9.5 years ago
Robert K. Bradley
▴ 40
12 results • Page
1 of 1
Recent ...
Replies
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
Alexandre
• 0
Hello James, Thank you for your answer and precise exemple ! It is disappointing but makes sense. Best, Alexandre
Comment: How to retrieve gene ontology GO class from gene list?
by
James W. MacDonald
65k
Yes. The `keys` argument to both `select` and `mapIds` will accept a vector (see `?select` for more information). Also, the [vignette][1] f…
Comment: How to retrieve gene ontology GO class from gene list?
by
bandconductor
• 0
Thanks, this is potentially a much faster way than parsing BiomRt. However, it is only returning one GO term right now (biomaRt returns a f…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
James W. MacDonald
65k
Both `RUVseq` and `sva` are meant to be used to remove technical variability. The problem is the identification of variability that is tech…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
Alexandre
• 0
Hello James, Thank you very much for your answer and taking the time to read my post. I understand your remark, but isn't the approach o…
Votes
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
Awards
• All
Scholar
to
James W. MacDonald
65k
Supporter
to
JKim
• 0
Popular Question
to
Gordon Smyth
50k
Popular Question
to
Chris
• 0
Supporter
to
Jonathan
▴ 10
Locations
• All
United States,
3 minutes ago
United States,
10 minutes ago
France,
17 minutes ago
WEHI, Melbourne, Australia,
21 minutes ago
EMBL Heidelberg,
34 minutes ago
Traffic: 1119 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6