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metadata
•
reset
1
vote
2
replies
813
views
Obtain metadata for software packages in Bioconductor
metadata
2.9 years ago • updated 2.8 years ago
Donghui
▴ 10
2
votes
2
replies
1.2k
views
How to access metadata of GAlignments objects
rtracklayer
Rsamtools
GAlignments
GRanges
metadata
updated 3.9 years ago by
Hervé Pagès
16k • written 3.9 years ago by
Robert
▴ 10
2
votes
1
reply
1.2k
views
combining columns for experimental design in DESeq2
deseq2
design
metadata
updated 4.3 years ago by
sebastian.lobentanzer
▴ 50 • written 4.3 years ago by
Assa Yeroslaviz
★ 1.5k
0
votes
2
replies
1.1k
views
Recount2 TCGA metadata missing sample, run and experiment columns
recount
metadata
tcga
updated 6.1 years ago by
rosabellascottgm
• 0 • written 6.1 years ago by
Mariela Cortés-López
• 0
2
votes
2
replies
1.4k
views
[VariantAnnotation] Preserve query metadata with locateVariants()
variantannotation
locatevariants
metadata
mcols
updated 6.3 years ago by
Valerie Obenchain
★ 6.8k • written 6.3 years ago by
enricoferrero
▴ 660
4
votes
3
replies
4.6k
views
What is the proper way to modify mcols of a GRanges inside a GRangesList?
granges
metadata
updated 6.9 years ago by
Michael Lawrence
★ 11k • written 6.9 years ago by
Ryan C. Thompson
★ 7.9k
0
votes
4
replies
1.1k
views
Data structure for my dataset
metadata
grangeslist
granges
sample
updated 7.0 years ago by
Michael Lawrence
★ 11k • written 7.0 years ago by
Sim1pall8a
• 0
1
vote
2
replies
2.0k
views
Subsetting GRanges based on metadata
GRanges
metadata
subsetting
updated 7.7 years ago by
Michael Lawrence
★ 11k • written 7.7 years ago by
mdeea123
▴ 10
3
votes
7
replies
1.8k
views
Group GRanges and keep metadata
granges
metadata
coursera
updated 7.9 years ago by
Michael Lawrence
★ 11k • written 7.9 years ago by
likeeatingpizza
▴ 10
4
votes
2
replies
1.3k
views
distinguish DataSource from Provider and ProviderVersion in makeTxDbPackage
genomicfeatures
txdb
maketxdbfromgff
metadata
updated 8.0 years ago by
Valerie Obenchain
★ 6.8k • written 8.0 years ago by
TimothéeFlutre
▴ 80
2
votes
3
replies
2.2k
views
Metadata Missing from vcf when reading in with readVcfAsVRanges
variantannotation
vranges
readvcf
readvcfasvranges
metadata
9.2 years ago
summerela
• 0
1
vote
3
replies
1.8k
views
Fast way to access metadata for GRangesList?
grangeslist
metadata
9.4 years ago
Robert K. Bradley
▴ 40
12 results • Page
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Answer: Cannabis and KEGGgraph
by
deeenes
▴ 30
Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…
Answer: RNAseq:Technical replicates from different batches
by
Gordon Smyth
50k
I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…
Comment: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param
by
russ.bainer
▴ 10
Hi, I'm hitting this too. As far as I can tell my DataTrack is fine, but perhaps I am missing something. Notably the same code works on o…
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
by
Chris
• 0
Hi Robert, If I don't want to use all pathway in c2 gene set but only a few pathways of interested, how can I do that? So we try to get a …
Comment: How to retrieve detailed regression results from deseq2
by
Weiqian
▴ 10
Hi Michael, thanks for the answer! I'll have a look : )
Votes
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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