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metams
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how to import a CDF file in R ?
xcms
metaMS
MSeasy
r
updated 8.6 years ago by
peer.karmaus
• 0 • written 8.6 years ago by
Nemo
▴ 80
1
vote
3
replies
1.8k
views
Is it possible to visualise the content of a xcmsSet object / the output of peak picking ?
metaMS
xcmx
CAMERA
updated 7.6 years ago by
ron.wehrens
▴ 20 • written 7.6 years ago by
lucie.conchou
• 0
1
vote
2
replies
1.1k
views
Baseline correction for GC-MS data
XCMS
metaMS
updated 3.8 years ago by
ron.wehrens
▴ 20 • written 3.8 years ago by
julien.kermorvant
▴ 30
0
votes
1
reply
1.5k
views
metaMS for analysis of GC-MS data
metaMS
xcms
GC-MS
metabolomics
volatile organic compounds
updated 7.9 years ago by
ron.wehrens
▴ 20 • written 7.9 years ago by
lucie.conchou
• 0
0
votes
1
reply
609
views
"unused argument" error metaMS
metaMS
updated 4.7 years ago by
ron.wehrens
▴ 20 • written 4.7 years ago by
f.f.vandenberg
• 0
0
votes
0
replies
682
views
SPME-GC-MS: metaMS missing peaks. Improve performance vs AMDIS.
metams
4.7 years ago
ryan.high
• 0
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Comment: Input Question for deseq.r
by
ATpoint
★ 4.0k
It is unclear what "deseq.r" is. It is not part of DESeq2, and almost certainly no part of RSeqAn. Please add details, and keep in mind tha…
Answer: DESEQ2 output gives multiple groups when only 2 groups are present
by
ATpoint
★ 4.0k
In the first PCA plot there is almost certainly some hidden character like whitespaces in the column from colData that encodes this group. …
Answer: A ComBat-seq issue: the covariates are confounded
by
ATpoint
★ 4.0k
```r > table(batch, group) group batch egfr gfp her2 1 0 12 5 2 6 6 0 ``` All of her2 is batch2, all of egfr i…
Comment: DESeq2 setting significant p-value
by
Dev
• 0
after running DESeq2 does it sort the value on the basis of pvalue, or anything, or does it give the data back in the input format I have …
Comment: DESeq filtering specific to contrasts
by
Carlin95
• 0
But wouldn't this result in a different gene set for each analysis stratification? How can you then compare if maybe gene x comes up in Tim…
Votes
Comment: Reading huge bismark coverage files using bbseq::read.bismark
Answer: Reading huge bismark coverage files using bbseq::read.bismark
Answer: Reading huge bismark coverage files using bbseq::read.bismark
Answer: How many of my genes from my gene list are in each KEGG pathway?
Comment: Light difference when using coef vs omit a group when compare 3 groups.
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