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Doing comparison of RNA-seq data using EdgeR
metaMSdata edgeR
updated 6 months ago by 51k • written 6 months ago by • 0
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How to search Pubmed Central or other fulltext literature base using regex?
metaMSdata Bioconductor
3 months ago Abiologist • 0
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Can log2cpm be used for proteomics data normalization?
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5 months ago • updated 4 months ago Daniel • 0
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featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_get_next_read_BIN: Assertion `l_name < 256' failed. Aborted (core dumpe…
metaMSdata
5 months ago shuwangxinze1996 • 0
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Visium RNA
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Retrieving Package Metadata from Bioconductor API: Versions and Dependencies
metaMSdata
updated 11 weeks ago by 4.0k • written 11 weeks ago by • 0
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How to control RAN-seq samples from different libraries
metaMSdata
updated 8 months ago by 67k • written 8 months ago by • 0
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News: Stop mirror service
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updated 4 months ago by 4.0k • written 4 months ago by • 0
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Spam: How do professional SEO services enhance user experience on my website?
metaMSdata
3 months ago Steven 0
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Comment: Are transformed values from rlog /vst log2 normalized counts? by Eva ▴ 10
I understood exactly what you said, but I got confused with the documentation and the info that gives about rlog because it seems to be tha…
Answer: featureCounts fails to load annotation file by James W. MacDonald 67k
I imagine Wei Shi will be along later with actual help, but for now do note that you can use an SAF file instead of a GTF. It's easy enough…
Comment: Error for AnnotationForge makeOrgPackageFromNCBI function by James W. MacDonald 67k
That error indicates that you have a file called NCBI.sqlite in your working directory that is missing some tables. You should delete that …
Comment: Are transformed values from rlog /vst log2 normalized counts? by James W. MacDonald 67k
The `DESeq2` package is meant to analyze count data! Most packages that are intended to be used for RNA-Seq data are going to want the raw …
Comment: Are transformed values from rlog /vst log2 normalized counts? by Eva ▴ 10
Many thanks for you detailed answer, I really appreciate it. Could you give me an example (or more if possible) of analysis using count-b…
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Answer: Are transformed values from rlog /vst log2 normalized counts?
Answer: Are transformed values from rlog /vst log2 normalized counts?
Comment: Are transformed values from rlog /vst log2 normalized counts?
Answer: Unable to install any Bioconductor package with new R 4.4.1 - path nor writable
Removing Effect of Covariate in Only a Subset of Samples in a Model Containing All Samples Loses Full Rank if Factor but not Numerical
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