Bioconductor Metamsdata

Showing : metamsdata • reset

vote

replies

431

views

metaMSdata

5 months ago • updated 4 months ago Daniel • 0

votes

replies

398

views

metaMSdata Bioconductor

3 months ago Abiologist • 0

votes

497

views

metaMSdata

written 6 months ago by Karlison • 0

votes

replies

483

views

metaMSdata

5 months ago shuwangxinze1996 • 0

votes

353

views

metaMSdata

updated 4 months ago by shepherl 4.0k • written 4 months ago by khonda • 0

votes

replies

views

metaMSdata

3 months ago Steven 0

votes

414

views

metaMSdata

updated 11 weeks ago by shepherl 4.0k • written 11 weeks ago by Sadman • 0

votes

324

views

metaMSdata

updated 8 months ago by James W. MacDonald 67k • written 8 months ago by jianyang.liu • 0

votes

replies

639

views

metaMSdata edgeR

updated 6 months ago by Gordon Smyth 51k • written 6 months ago by Faisal • 0

9 results • Page 1 of 1

Recent ...

Replies

Comment: Error for AnnotationForge makeOrgPackageFromNCBI function by James W. MacDonald 67k

That error indicates that you have a file called NCBI.sqlite in your working directory that is missing some tables. You should delete that …

Comment: Are transformed values from rlog /vst log2 normalized counts? by James W. MacDonald 67k

The `DESeq2` package is meant to analyze count data! Most packages that are intended to be used for RNA-Seq data are going to want the raw …

Comment: Are transformed values from rlog /vst log2 normalized counts? by Eva ▴ 10

Many thanks for you detailed answer, I really appreciate it. Could you give me an example (or more if possible) of analysis using count-b…

Comment: Error for AnnotationForge makeOrgPackageFromNCBI function by Gabriela • 0

Hi, I have the same issue as you! Does this happen because of internet speed? I already downloaded 2 times these files! > makeOrgPacka…

Answer: Are transformed values from rlog /vst log2 normalized counts? by James W. MacDonald 67k

They are not counts because counts are integers. ``` > z <- makeExampleDESeqDataSet() ## These are counts > head(assay(z)) sam…

Votes

Answer: Unable to install any Bioconductor package with new R 4.4.1 - path nor writable

Removing Effect of Covariate in Only a Subset of Samples in a Model Containing All Samples Loses Full Rank if Factor but not Numerical

Comment: How to conduct maSigPro analysis with only one condition?

Comment: Spectra and PSMatch- trouble in reducePSMs, joinSpectraData, or countIdentificat

Awards • All