Bioconductor Metavolcanor

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limma MetaVolcanoR

2.0 years ago JAcky • 0

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MetaVolcanoR

updated 2.1 years ago by Kevin Blighe ★ 4.0k • written 2.1 years ago by JAcky • 0

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limma MetaVolcanoR EnhancedVolcano

2.1 years ago JAcky • 0

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Comment: [DESeq2] time series strain-specific differences over time by Michael Love 42k

Yes, this gives mut vs wt at minute 15 comparing to baseline.

Answer: Annotating DMRs by James W. MacDonald 67k

You could use `ChIPpeakAnno`, or `missMethyl`

Comment: [DESeq2] time series strain-specific differences over time by floriandeckert ▴ 30

Dear Michael, thank you very much! I think I do have a intuition of the problem. It is still correct to use the following to compare WT v…

Comment: ı cant install clusterprofiler on my Ubuntu 20.04.6 LTS by semra • 0

``` >BiocManager::install(version = "3.19", lib = "~/R/x86_64-pc-linux-gnu-library/4.4") 'getOption("repos")' replaces Bioconductor standar…

Comment: [DESeq2] time series strain-specific differences over time by Michael Love 42k

I will say it is possible but a bit cumbersome to perform an LRT for 60 vs 0. You would have to re-run `DESeq()` or minimally `nbinomLRT` w…

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