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methyAnalysis
•
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0
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0
replies
610
views
Diffrential Gene expression in a group of specific methylated prometor patience
GeneExpression
methyAnalysis
MethylationArray
3.4 years ago
coobzie
• 0
1
vote
2
replies
1.4k
views
Methylation data visualization using methyAnalysis with minfi
methylation
microarray
illumina
minfi
methyanalysis
updated 5.4 years ago by
Ou, Jianhong
★ 1.3k • written 5.4 years ago by
Adam_M
• 0
0
votes
0
replies
720
views
methyAnalysis - library(methyAnalysis) hangs when talking to Internet
methyanalysis
6.2 years ago
mcahn
• 0
2
votes
4
replies
2.6k
views
Problem in installing Bioconductor packages due to "IRanges"
lumi
methylumi
methyAnalysis
6.3 years ago
topijush
▴ 10
0
votes
0
replies
809
views
Recurring error in smoothMethygenoset step for MethyAnalysis
methyanalysis
6.4 years ago
charleneee95
• 0
1
vote
9
replies
3.6k
views
strange results from differential methylation analysis using limma
limma
methylation
methyanalysis
IMA
updated 23 months ago by
Sean Davis
21k • written 7.1 years ago by
RC
• 0
0
votes
0
replies
991
views
methyAnalysis: heatmapByChromosome not works
methyAnalysis
7.5 years ago
Shicheng Guo
• 0
0
votes
1
reply
915
views
problem with identifySigDMR command
methyAnalysis
7.8 years ago • updated 7.7 years ago
yuping.zhang
• 0
0
votes
0
replies
1.7k
views
methyAnalysis error with example data
methyanalysis
7.9 years ago
Tom
▴ 10
4
votes
10
replies
4.4k
views
Illumina MethylationEPIC vs. 450K
methylumi
minfi
illuminahumanmethylation450k.db
450k
methyanalysis
updated 8.2 years ago by
Peter Hickey
▴ 740 • written 8.2 years ago by
Ahdee
▴ 50
1
vote
13
replies
2.2k
views
MethylAid package visualize function not opening a web browser
illimina 450k methylation
methyanalysis
methylaid
8.6 years ago
jdangelo
• 0
0
votes
1
reply
4.1k
views
methyAnalysis M values and Beta Values
methyAnalysis
methyanalysis
450k
updated 9.1 years ago by
Pan Du
▴ 80 • written 9.1 years ago by
andrew.j.skelton73
▴ 370
1
vote
5
replies
1.3k
views
Understanding methyAnalysis Results
methyAnalysis
methyanalysis
methylation
illuminahumanmethylation450k.db
updated 9.1 years ago by
Pan Du
▴ 80 • written 9.1 years ago by
andrew.j.skelton73
▴ 370
0
votes
0
replies
1.7k
views
DMR identification: minfi speed, memory problems
Annotation
convert
minfi
methyAnalysis
bumphunter
Annotation
convert
minfi
methyAnalysis
10.2 years ago
Allegra Petti
▴ 120
0
votes
8
replies
2.2k
views
methyAnalysis for DMR identification
convert
methyAnalysis
convert
methyAnalysis
updated 10.2 years ago by
Giovanni Calice
▴ 160 • written 10.2 years ago by
Guest User
★ 13k
0
votes
6
replies
3.0k
views
DMR identification: minfi speed, memory problems
Annotation
convert
minfi
methyAnalysis
bumphunter
Annotation
convert
minfi
methyAnalysis
updated 10.2 years ago by
James W. MacDonald
65k • written 10.2 years ago by
Guest User
★ 13k
0
votes
0
replies
1.7k
views
Conversion of minfi format MethylSet to methyAnalysis format MethyGenoSet
Cancer
charm
minfi
methyAnalysis
Cancer
charm
minfi
methyAnalysis
11.2 years ago
Ed Schwalbe
▴ 20
0
votes
2
replies
1.3k
views
genoset:::initGenoSet
methyAnalysis
methyAnalysis
updated 11.2 years ago by
Pan Du
▴ 440 • written 11.2 years ago by
Schalkwyk, Leonard
▴ 20
0
votes
2
replies
1.7k
views
Loading Data into MethyAnalysis
Microarray
methyAnalysis
Microarray
methyAnalysis
updated 11.3 years ago by
Pan Du
▴ 440 • written 11.3 years ago by
Guest User
★ 13k
0
votes
1
reply
1.1k
views
methyAnalysis methyGenoSet function
methyAnalysis
methyAnalysis
updated 11.3 years ago by
Sean Davis
21k • written 11.3 years ago by
Giancarlo
▴ 10
0
votes
0
replies
1.2k
views
importing data problem with methyAnalysis package
Biophysics
Annotation
Preprocessing
annotate
lumi
methyAnalysis
Biophysics
Annotation
lumi
11.3 years ago
Pan Du
▴ 440
21 results • Page
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Comment: Reproducibility issue with scran together with lapply and BiocParallel
by
ATpoint
★ 4.0k
Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
winwater0928
• 0
Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…
Answer: Reproducibility issue with scran together with lapply and BiocParallel
by
Aaron Lun
★ 28k
IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…
Comment: DESeq2 output used for PCA plot on R studio
by
Aaliya
• 0
I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…
Votes
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
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