Showing : methyanalysis • reset
4
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Illumina MethylationEPIC vs. 450K
methylumi minfi illuminahumanmethylation450k.db 450k methyanalysis
updated 7.0 years ago by ▴ 630 • written 7.0 years ago by ▴ 50
2
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4
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Problem in installing Bioconductor packages due to "IRanges"
lumi methylumi methyAnalysis
5.1 years ago topijush ▴ 10
1
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9
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2.7k
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strange results from differential methylation analysis using limma
limma methylation methyanalysis IMA
updated 8 months ago by 21k • written 5.9 years ago by • 0
1
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5
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1.0k
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Understanding methyAnalysis Results
methyAnalysis methyanalysis methylation illuminahumanmethylation450k.db
updated 7.9 years ago by ▴ 80 • written 7.9 years ago by ▴ 360
1
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2
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Methylation data visualization using methyAnalysis with minfi
methylation microarray illumina minfi methyanalysis
updated 4.2 years ago by ★ 1.3k • written 4.2 years ago by • 0
1
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13
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1.5k
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MethylAid package visualize function not opening a web browser
illimina 450k methylation methyanalysis methylaid
7.3 years ago jdangelo • 0
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0
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1.4k
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Conversion of minfi format MethylSet to methyAnalysis format MethyGenoSet
Cancer charm minfi methyAnalysis Cancer charm minfi methyAnalysis
10.0 years ago Ed Schwalbe ▴ 20
0
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8
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1.7k
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methyAnalysis for DMR identification
convert methyAnalysis convert methyAnalysis
updated 9.0 years ago by ▴ 160 • written 9.0 years ago by ★ 12k
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0
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DMR identification: minfi speed, memory problems
Annotation convert minfi methyAnalysis bumphunter Annotation convert minfi methyAnalysis
8.9 years ago Allegra Petti ▴ 120
0
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1
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3.5k
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methyAnalysis M values and Beta Values
methyAnalysis methyanalysis 450k
updated 7.9 years ago by ▴ 80 • written 7.9 years ago by ▴ 360
0
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1
reply
707
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problem with identifySigDMR command
methyAnalysis
6.6 years ago • updated 6.5 years ago yuping.zhang • 0
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0
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762
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methyAnalysis: heatmapByChromosome not works
methyAnalysis
6.3 years ago Shicheng Guo • 0
0
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0
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595
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Recurring error in smoothMethygenoset step for MethyAnalysis
methyanalysis
5.2 years ago charleneee95 • 0
0
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0
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497
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methyAnalysis - library(methyAnalysis) hangs when talking to Internet
methyanalysis
5.0 years ago mcahn • 0
0
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6
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2.4k
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DMR identification: minfi speed, memory problems
Annotation convert minfi methyAnalysis bumphunter Annotation convert minfi methyAnalysis
updated 9.0 years ago by 62k • written 9.0 years ago by ★ 12k
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0
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356
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Diffrential Gene expression in a group of specific methylated prometor patience
GeneExpression methyAnalysis MethylationArray
2.2 years ago coobzie • 0
0
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0
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1.5k
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methyAnalysis error with example data
methyanalysis
6.7 years ago Tom ▴ 10
0
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0
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935
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importing data problem with methyAnalysis package
Biophysics Annotation Preprocessing annotate lumi methyAnalysis Biophysics Annotation lumi
10.1 years ago Pan Du ▴ 440
0
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1
reply
930
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methyAnalysis methyGenoSet function
methyAnalysis methyAnalysis
updated 10.1 years ago by 21k • written 10.1 years ago by ▴ 10
0
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2
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1.4k
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Loading Data into MethyAnalysis
Microarray methyAnalysis Microarray methyAnalysis
updated 10.1 years ago by ▴ 440 • written 10.1 years ago by ★ 12k
0
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2
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973
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genoset:::initGenoSet
methyAnalysis methyAnalysis
updated 10.0 years ago by ▴ 440 • written 10.0 years ago by ▴ 20
21 results • Page 1 of 1
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Comment: Which input file is used for DGEList in EgdeR? by mohammedtoufiq91 ▴ 10
Thank you @gordonsmyth My collaborator asked me to test this pipeline with `egdeR` package. We are interested at gene level analysis only…
Answer: Why in Bioconductor community people rarely upvote questions? by Gordon Smyth 47k
I think it is a good idea to start a discussion with correct information. Looking back through Bioconductor Support records, it is not at a…
Comment: How to identify top most variable genes from log2 normalized data? by Gordon Smyth 47k
Your code doesn't look right to me. I think you're using order() where sort() would be more appropriate. To order your cpm matrix by row v…
Comment: How to load fasta file with openPrimeR? by Santiago Edilberto • 0
> library(openPrimeR) There are missing/non-functioning external tools. To use the full potential of openPrimeR, please mak…
Answer: Which input file is used for DGEList in EgdeR? by Gordon Smyth 47k
I use and recommend featureCounts. Despite all that has been written on this topic, I still think that direct gene counting is faster and m…
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Answer: Which input file is used for DGEList in EgdeR?
Answer: Identifying DEGs using lfcshrink()
Answer: Is this DESeq2 interactions design correct?
Comment: STRINGdb string_db$map error
Comment: How to normalize long-read RNA-seq data for comparison with short-reads
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