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Answer: Extracting multi-design adjusted counts on DESeq2
It's still not possible directly in DESeq2 as DESeq2 internally adds the covariates into its model rather than ever directly altering count…
Comment: GO data for fgsea: should ensembl data be augmented to contain parent terms?
Thanks again. I realize my question is not really about Bioconductor. I crossposted on [biostars](https://www.biostars.org/p/9540167/).
Comment: bitr returning unexpected length of gene IDs after conversion.
I cannot find the existence of a "ADCYS" gene in human so this is normal that it is discarded
Comment: Error: Faceting variables must have at least one value when plotting with ChIPQC
Exactly solve my problem! How come you found a solution like this! You are genius.
Comment: DESeq2 analyze MeRIP-seq
Hi Michael, I have a question considering the differential m6A peaks here. DESeq2 use the read couts for each peak as input. Does the de…
Answer: Comparing different method for DESEQ2
Registrations are now open for BioC Asia 2022
A: Error: Faceting variables must have at least one value when plotting with ChIPQC
C: Error: Faceting variables must have at least one value when plotting with ChIPQC
Answer: Limma adj.p.value the same for many different p.values
James W. MacDonald
WEHI, Melbourne, Australia,
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