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methyanalysis
•
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0
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0
replies
610
views
Diffrential Gene expression in a group of specific methylated prometor patience
GeneExpression
methyAnalysis
MethylationArray
3.4 years ago
coobzie
• 0
1
vote
2
replies
1.4k
views
Methylation data visualization using methyAnalysis with minfi
methylation
microarray
illumina
minfi
methyanalysis
updated 5.4 years ago by
Ou, Jianhong
★ 1.3k • written 5.4 years ago by
Adam_M
• 0
0
votes
0
replies
719
views
methyAnalysis - library(methyAnalysis) hangs when talking to Internet
methyanalysis
6.2 years ago
mcahn
• 0
2
votes
4
replies
2.6k
views
Problem in installing Bioconductor packages due to "IRanges"
lumi
methylumi
methyAnalysis
6.3 years ago
topijush
▴ 10
0
votes
0
replies
808
views
Recurring error in smoothMethygenoset step for MethyAnalysis
methyanalysis
6.4 years ago
charleneee95
• 0
1
vote
9
replies
3.6k
views
strange results from differential methylation analysis using limma
limma
methylation
methyanalysis
IMA
updated 23 months ago by
Sean Davis
21k • written 7.1 years ago by
RC
• 0
0
votes
0
replies
989
views
methyAnalysis: heatmapByChromosome not works
methyAnalysis
7.5 years ago
Shicheng Guo
• 0
0
votes
1
reply
915
views
problem with identifySigDMR command
methyAnalysis
7.8 years ago • updated 7.7 years ago
yuping.zhang
• 0
0
votes
0
replies
1.7k
views
methyAnalysis error with example data
methyanalysis
7.9 years ago
Tom
▴ 10
4
votes
10
replies
4.4k
views
Illumina MethylationEPIC vs. 450K
methylumi
minfi
illuminahumanmethylation450k.db
450k
methyanalysis
updated 8.2 years ago by
Peter Hickey
▴ 740 • written 8.2 years ago by
Ahdee
▴ 50
1
vote
13
replies
2.2k
views
MethylAid package visualize function not opening a web browser
illimina 450k methylation
methyanalysis
methylaid
8.5 years ago
jdangelo
• 0
0
votes
1
reply
4.1k
views
methyAnalysis M values and Beta Values
methyAnalysis
methyanalysis
450k
updated 9.1 years ago by
Pan Du
▴ 80 • written 9.1 years ago by
andrew.j.skelton73
▴ 370
1
vote
5
replies
1.3k
views
Understanding methyAnalysis Results
methyAnalysis
methyanalysis
methylation
illuminahumanmethylation450k.db
updated 9.1 years ago by
Pan Du
▴ 80 • written 9.1 years ago by
andrew.j.skelton73
▴ 370
0
votes
0
replies
1.7k
views
DMR identification: minfi speed, memory problems
Annotation
convert
minfi
methyAnalysis
bumphunter
Annotation
convert
minfi
methyAnalysis
10.1 years ago
Allegra Petti
▴ 120
0
votes
8
replies
2.2k
views
methyAnalysis for DMR identification
convert
methyAnalysis
convert
methyAnalysis
updated 10.2 years ago by
Giovanni Calice
▴ 160 • written 10.2 years ago by
Guest User
★ 13k
0
votes
6
replies
3.0k
views
DMR identification: minfi speed, memory problems
Annotation
convert
minfi
methyAnalysis
bumphunter
Annotation
convert
minfi
methyAnalysis
updated 10.2 years ago by
James W. MacDonald
65k • written 10.2 years ago by
Guest User
★ 13k
0
votes
0
replies
1.7k
views
Conversion of minfi format MethylSet to methyAnalysis format MethyGenoSet
Cancer
charm
minfi
methyAnalysis
Cancer
charm
minfi
methyAnalysis
11.2 years ago
Ed Schwalbe
▴ 20
0
votes
2
replies
1.3k
views
genoset:::initGenoSet
methyAnalysis
methyAnalysis
updated 11.2 years ago by
Pan Du
▴ 440 • written 11.2 years ago by
Schalkwyk, Leonard
▴ 20
0
votes
2
replies
1.7k
views
Loading Data into MethyAnalysis
Microarray
methyAnalysis
Microarray
methyAnalysis
updated 11.3 years ago by
Pan Du
▴ 440 • written 11.3 years ago by
Guest User
★ 13k
0
votes
1
reply
1.1k
views
methyAnalysis methyGenoSet function
methyAnalysis
methyAnalysis
updated 11.3 years ago by
Sean Davis
21k • written 11.3 years ago by
Giancarlo
▴ 10
0
votes
0
replies
1.2k
views
importing data problem with methyAnalysis package
Biophysics
Annotation
Preprocessing
annotate
lumi
methyAnalysis
Biophysics
Annotation
lumi
11.3 years ago
Pan Du
▴ 440
21 results • Page
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Answer: Citation for edgeR user guide
by
Gordon Smyth
50k
Thanks for thinking about how to cite edgeR. Citations are indeed the main way by which the edgeR authors get credit for their work. The Us…
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
You are just making up data? What is the point of this exercise?
Comment: How to retrieve gene ontology GO class?
by
James W. MacDonald
65k
What do you mean by 'the information'? Do you have things in particular that you want?
Comment: minfi::read.metharray.exp
by
clacarion
• 0
I think its work with `read.metharray.sheet` ```r > sheet <- read.metharray.sheet("/Users/clarachretienneau/Desktop/clock_epigenetic/PJ120…
Comment: minfi::read.metharray.exp
by
clacarion
• 0
Thank you for your response Basti ! I add all the idat files in a unique folder called "idat" and add it in my path ```r > list.files("…
Votes
Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)
Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.
Answer: minfi::read.metharray.exp
Comment: Trying to use enrichGO
Answer: Cannabis OrgDb
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